Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3382 ATGGCTCTTAGAGAACAACAACAACAACAACAACAATCTCCCTCATTCCTCGATGCCCTTCTCTGTGAAGAGCAACATACATTTGATGATGATGATGAAGAAAAAGCCACTCATGCTACTGAGTGTCACACCATTAACGATGACCCACTCATCCTGTTCTGGGAGGAGGATGATGAGCTTGTCTCGTTAATCTCGAAGGAACGTGGAGAGACCCATTTGGGTTCTCTCGATCTTCATGATGGAGGGACTCGTGTTGAGGGTGTGGCTTGGATTTCTAAAGTCTCTGCGCATTTTGGCTTTTCTGCTTTGACTACTGTTCTTGCTGTGAGCTACTTTGATAGGTTCATTACTAGCCCCAGGTTTCAAAGGGACAAGCCATGGATGACGCAGCTTAGTGCTGTTGCGTGTTTGTCTCTGGCTGCTAAAGTGGAGGAGACCCATGTGCCTCTTTTGTTGGATCTTCAAGTGGAGGAATCAAGGTTCGTGTTTGAAGCAAAGACTATACAGAGAATGGAGCTTCTAGTTTTGTCAACTCTGAAATGGAGGATGCATCCTGTGACCCCAATTTCCTTCTTTGAACACATTATCAGAAGGCTTGGTTTAAAGACCCGCTTGCACTGGGAATTCTTGTGGCGCTGTGAGCGAGTTCTTCTCAATGTCATTCCAGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTGGCTGCTGCTGCAATGATCCATGTTATTAAAGAGATTGAACCATTTAATGCAACTGAGTACATTGATCAGCTTATGGGTTTACTGAAGATAAGTGAGGAACAAGTGAACCAGTGCTACAAGCTCATACTGAAGCTGTTAGTCTGCTATGAAGGCATTTCCAATCTTCACCCGAAGCGCAAGCGATCTGAACCGAGTAGCCCGGGGGGTGTTATTGATGCATCTTTCAGCTGTGACAGCTCAAATGATTCATGGGCCACAACATCAGCTGTCTCGACTTCACTGGAGCCACTGTTTAAGAGGAGCAGAGCTCAGGACCAGCAGATGCGGTTGCCTTCTGTGAACCGCGTGTCCATTGATGTTCTTAATAGCCCTCGCTAA 1080 0.4574 MALREQQQQQQQSPSFLDALLCEEQHTFDDDDEEKATHATECHTINDDPLILFWEEDDELVSLISKERGETHLGSLDLHDGGTRVEGVAWISKVSAHFGFSALTTVLAVSYFDRFITSPRFQRDKPWMTQLSAVACLSLAAKVEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIIRRLGLKTRLHWEFLWRCERVLLNVIPDSRVMSYLPSTLAAAAMIHVIKEIEPFNATEYIDQLMGLLKISEEQVNQCYKLILKLLVCYEGISNLHPKRKRSEPSSPGGVIDASFSCDSSNDSWATTSAVSTSLEPLFKRSRAQDQQMRLPSVNRVSIDVLNSPR* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3382 359 Pfam Cyclin, C-terminal domain 186 295 IPR004367 -
Lja4g3382 359 Pfam Cyclin, N-terminal domain 82 183 IPR006671 -
Lja4g3382 359 PANTHER CYCLINS 2 343 IPR039361 -
Lja4g3382 359 SUPERFAMILY Cyclin-like 47 184 IPR036915 -
Lja4g3382 359 SUPERFAMILY Cyclin-like 187 290 IPR036915 -
Lja4g3382 359 SMART Cyclin_C_2 186 312 IPR004367 -
Lja4g3382 359 PANTHER CYCLIN-D3-2 2 343 - -
Lja4g3382 359 SMART cyclin_7 194 278 IPR013763 -
Lja4g3382 359 SMART cyclin_7 89 177 IPR013763 -
Lja4g3382 359 Gene3D - 185 274 - -
Lja4g3382 359 Gene3D - 83 184 - -
Lja4g3382 359 CDD CYCLIN 83 176 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3382 Lja-Chr4 63957859 63959914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3382 1 349 Core Cell Cycle Gene Families AT5G67260 48.787 6.71e-106 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3382 K14505 - gmx:100785030 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0305 2 2781901 2783292 Lja4g3382 4 63957859 63959914 ECH
Lja1g4133 1 52533623 52535296 Lja4g3382 4 63957859 63959914 ECH
Lja4g3382 4 63957859 63959914 Lja4g3382 4 63957859 63959914 ECH
Lja4g3382 4 63957859 63959914 Lja2g0305 2 2781901 2783292 PCT