Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3376 ATGGCAGTGGAGCTCATGACGGGTGCTTACAGTTTCACATCCAAATCCGAAGATAATGCTGTCCAGGAAGCCGCTTCTGGTTTGGAGAGCGTTGAGAAGCTCATCAGGTTGCTGTCTCAGACTCAGAAGCAGTTTCATCATCATCACTCTTCTCCTTCTTCTTCCTCTGCACCTCATAATCCCAACCTTACTTCCATAGAAATCGAGAACGATTGCAGAGCTGTTGCGGATGTTGCAGTTTCCAAGTTCAAGAGGGTGATTTCTCTTCTGGGTCGAACCAGAACTGGCCATGCTCGCTTCAGAAGAGCTCCTCTGCCTCTTGTTCCAATTAACCAAGTCCCAAAAACAGAGCACCTTCCTTCTGAGCCTAGAATCTTCAACGCCATCCCTTTGCAGCAGATTCCACCCTCCACCGCCACCCTCCACCACCACCACCACAGAGAACCCCCCGAAATTGGAGCAGCAACCACCGCCACCCTCGAGAGGAAGGAATCTTCTAAGACCCTCAATTTCTCATCCTACACCTCTGCTCCAAGCTCCTTCATCTCCTCCCTCACTGGCGACACCGACACCAAGCACCACCCGTCGTCGTCGTCTCCGCCGCCATCAGGGTCTTTTCAGATCACGGCAGGGAAGCCTCCTCTGTCATCATCCTCCTTAAAGAGGAAGTGCAGCTCTGAAACCTTGGGTTCTGGAAAGTGTGGCAGTTCATCTGGACGCTGTCATTGTTCCAAAAAAAGCAGGAAAATGAGGTTGAAAAGGGTTGTGAGGGTACCAGCAATAAGCTTGAAGATGGCTGATATTCCACCAGATGATTATTCCTGGAGAAAATATGGTCAGAAACCTATTAAAGGATCCCCTCATCCAAGGGGATATTACAAGTGCAGTAGTGTGAGAGGTTGCCCAGCAAGAAAACATGTAGAACGAGCCCTGGATGATGCTGCTATGCTGGTAGTGACCTATGAAGGAGAGCACAATCACGCTCTCTCTGCAGCAGATGCTACTAATCTCATTTTAGAATCATCTTAA 1029 0.4937 MAVELMTGAYSFTSKSEDNAVQEAASGLESVEKLIRLLSQTQKQFHHHHSSPSSSSAPHNPNLTSIEIENDCRAVADVAVSKFKRVISLLGRTRTGHARFRRAPLPLVPINQVPKTEHLPSEPRIFNAIPLQQIPPSTATLHHHHHREPPEIGAATTATLERKESSKTLNFSSYTSAPSSFISSLTGDTDTKHHPSSSSPPPSGSFQITAGKPPLSSSSLKRKCSSETLGSGKCGSSSGRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDAAMLVVTYEGEHNHALSAADATNLILESS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3376 342 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 14 342 - -
Lja4g3376 342 MobiDBLite consensus disorder prediction 41 64 - -
Lja4g3376 342 SMART WRKY_cls 269 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3376 342 MobiDBLite consensus disorder prediction 184 241 - -
Lja4g3376 342 ProSiteProfiles WRKY domain profile. 264 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3376 342 SUPERFAMILY WRKY DNA-binding domain 266 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g3376 342 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 14 342 IPR044810 GO:0003700
Lja4g3376 342 MobiDBLite consensus disorder prediction 184 243 - -
Lja4g3376 342 Gene3D WRKY domain 255 330 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g3376 342 Pfam WRKY DNA -binding domain 271 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3376 342 Pfam Plant zinc cluster domain 221 267 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3376 Lja-Chr4 63825112 63827069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3376 1 327 WRKY Transcription Factor Family AT2G24570 45.373 4.03e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja4g3376 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3376 - - lang:109350121 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3376 4 63825112 63827069 Lja4g3376 4 63825112 63827069 ECH