Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3371 ATGCTTCTTAATCATTTCAAAACCACACTCTTCACTCTCTTCATCTTCACTTCCTCCGCCGCCGCCACTGTCAATGACACCACCACGCTCCCACCAGACGCAGTCTCCCTGCTATCCTTCAAACGCGAAGCAGACCAAAACGACAAGCTCCTCTACACGCTCAACGAGCGCTACGACTACTGCCAATGGCAAGGAGTCAAATGCTCACAGGGTCGCGTCTTCCGCTTCGTCCTCCAAGACCTCTCCCTCGCCGGCACCTTCCCCGCGGACACCCTCACGCGCCTCGACCAGCTCCGTGTCCTCACGCTCCGCAACAACTCCCTCACCGGACCCATCCCTGATCTCTCACCTCTCACAAACCTCAAATCACTCTTCCTCGACCGCAACCACTTCTCCGGCGCTTTCCCGCCGTCAATCCTCTCCCTCCACCGCCTCCTCACTCTCTCGCTCAGCCACAACAACCTCTCCGGTCAGCTCCCGGTTCAGCTCAACCTCCTTGACCGCCTCACTTCCCTCCGGTTGGACTCCAACTCCTTCACTGGCTCCCTCCCTCCTCTCAACCAGACCGAGCTCCGGGTACTCAACGTCTCCGCCAACAACCTCACCGGCCCGGTTCCGGTGACACCGACACTCTCCCGGTTCAAACCGGCGTCGTTTTCATCCAACCCGGGTCTCTGCGGTGAGATTGTGCATAGACAATGCGGGAATCGCTCTCGATTCTTCGATTCTCCGAACGGCACCGTTTCGCCGTCGGCCCCGCTCGGGCAGAGTGAGGACTCGCAGGGAATCGTGGTGGTTTCTTCCCCGGAGAGGAAGAAGCACAAGAGAATCGGGTTGGTTCTCGGGTTAACGGTTGGGGCTGCGATTCTTGTTGCTTCTTCGCTTGCAGTGATTGTTGTGTTGGTTAGGGGACAGAGGAAAGGAAATGGAAGCGGGAAGTTTCCTGTGGTGTCGCCCGGGATGTCTTCGCCGGCGGCGGTGGAGGTGCGCGGCGAGGTTGGGAGGAGTGAGAAGGTGAAGAAGATGGAGGAGGCGCACAGGAGTGGGAAGCTGATGTTCTGCTGTGGGGAGGTGCAGGACTACACGCTGGAGCAGCTGATGAGGGCTTCGGCGGAGCTTCTAGGGAGGGGGAGAGTGGGGTCCACGTATAAGGCGGTGCTGGATTCGCGGCTGATAGTGACGGTGAAGAGGCTGGATGGCGGTAATACGGAGGCGGCCGGCGGGGAAGTGTTCGAGCGGCACATGGAGGTGGTCGGGAGGCTTCGCCACCCGAATTTGGTTACTTTGAGGGCTTATTTTCAGGCCAAGGGAGAGAAGCTCATCATCTATGATTATCAACCCAATGGCAGCCTCTTCAACCTTGTTCATGGTTCTAGATCAGCAAGGGCGAAGCCCCTGCATTGGACATCATGCTTAAAAATAGCCGAAGATGTAGCCCACGGACTTGCTTACATACACCAAGCTTCTTCCTTAATTCATGGCAACCTGAAATCCTCAAATGTCCTACTCGGAGCGGACTTTGAAGCTTGTGTTACAGACTATTGTTTGTCCTTCCTTGCAGACCCTTCATTCACTGAAGATGCTAATTCTGCGGCTTACAAAGCACCGGAGGCTCGCAAGTCTAGCCAGAGGGCCACTACAAAGTCTGATGTGTATGCTTTCGGGGTACTACTATTGGAGCTTTTGACGGGTAAACATTCTTCCCAGCATCCTTTCCTTGAGCCAGCGGATTTGCAAGATTGGGTTAGAGCAATGAGGGACGATGATGGCAGTGAAGACAACCGGCTAGAAATGCTCACAGAGGTCGCCAGTATTTGCAGCGCGACCTCGCCCGAGCAGAGGCCGGCAATGTGGCAGGTCCTTAAGATGATTCAGGGAATAAAGGATAGTGTTTCAATTGAGGACGCCACATACGCAGGACTCTCATAG 1929 0.5578 MLLNHFKTTLFTLFIFTSSAAATVNDTTTLPPDAVSLLSFKREADQNDKLLYTLNERYDYCQWQGVKCSQGRVFRFVLQDLSLAGTFPADTLTRLDQLRVLTLRNNSLTGPIPDLSPLTNLKSLFLDRNHFSGAFPPSILSLHRLLTLSLSHNNLSGQLPVQLNLLDRLTSLRLDSNSFTGSLPPLNQTELRVLNVSANNLTGPVPVTPTLSRFKPASFSSNPGLCGEIVHRQCGNRSRFFDSPNGTVSPSAPLGQSEDSQGIVVVSSPERKKHKRIGLVLGLTVGAAILVASSLAVIVVLVRGQRKGNGSGKFPVVSPGMSSPAAVEVRGEVGRSEKVKKMEEAHRSGKLMFCCGEVQDYTLEQLMRASAELLGRGRVGSTYKAVLDSRLIVTVKRLDGGNTEAAGGEVFERHMEVVGRLRHPNLVTLRAYFQAKGEKLIIYDYQPNGSLFNLVHGSRSARAKPLHWTSCLKIAEDVAHGLAYIHQASSLIHGNLKSSNVLLGADFEACVTDYCLSFLADPSFTEDANSAAYKAPEARKSSQRATTKSDVYAFGVLLLELLTGKHSSQHPFLEPADLQDWVRAMRDDDGSEDNRLEMLTEVASICSATSPEQRPAMWQVLKMIQGIKDSVSIEDATYAGLS* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3371 642 Gene3D Transferase(Phosphotransferase) domain 1 447 638 - -
Lja4g3371 642 Pfam Protein kinase domain 371 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3371 642 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 638 - -
Lja4g3371 642 SUPERFAMILY Protein kinase-like (PK-like) 372 628 IPR011009 -
Lja4g3371 642 MobiDBLite consensus disorder prediction 242 261 - -
Lja4g3371 642 SUPERFAMILY L domain-like 31 227 - -
Lja4g3371 642 Gene3D Ribonuclease Inhibitor 32 187 IPR032675 -
Lja4g3371 642 ProSiteProfiles Leucine-rich repeat profile. 97 119 IPR001611 GO:0005515
Lja4g3371 642 ProSiteProfiles Protein kinase domain profile. 368 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3371 642 PANTHER LRR RECEPTOR-LIKE KINASE 9 638 - -
Lja4g3371 642 Gene3D Phosphorylase Kinase; domain 1 334 445 - -
Lja4g3371 642 Gene3D Ribonuclease Inhibitor 188 237 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3371 Lja-Chr4 63730022 63733393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3371 15 635 Receptor kinase-like Gene Family AT3G50230 52.969 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja4g3371 Pkinase 9.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3371 - - gmx:100783086 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3371 4 63730022 63733393 Lja4g3371 4 63730022 63733393 ECH