Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3370 ATGGAATCAACACCGGAAAATTGCTCCGTCAAAGTGGCTCTTCACATTCGTCCTCTCATTGCCGATGAACGACAACAAGGTTGCACTGAATGCGTTTCCGTCACAAATGGAAAACCTCAGGTTCAAATTGGGTCACATTCCTTTACATTTGATCATGTTTATGGAAATGGTGGATCACCTTCAGCTGACATGTTTGAGGAATGTGTTGCGCCATTGGTTGATGGGTTATTCCAAGGATTCAATGCTACTGTACTTGCTTATGGTCAGACAGGATCTGGGAAAACATATACCATGGGAACTGGTTATAGTGACAATTCTCAGACTGGCTTGACTCCTCGGGTTATGAATGCGTTGTTCAACAAGATTGAAATGCTAAAACATCAAACAGAATTTCAGTTGCATGTCTCCTTCATTGAGATTTTGAAGGAAGAGGTACTGGACTTGTTGGATACAGTATCTATGGGAAAATCAGAAACCTCTAACTCTAATGGACATTCTGGAAAAGTAACTATTCCTGGGAAGTCACCGATACAAATTCGTGAAACATCAAATGGAGTAATAACACTAGCAGGATCAACCGAAGTTGCTGTGAGTACATTACAGGAGATGGCTGCTTGTTTAGAGCAGGGTTCTTTATGTAGGGCAACTGGAAGTACAAATATGAACAACCAGTCCAGTCGGTCACATGCCATCTTCACAATTACATTAGAACAGATGCACAAACTCCATCCAGTTTCTTCCAGTAATGACACCTCAGATGAGGATATGGGTGAAGAATACCTTTCAGCAAAGTTCCATTTGGTAGATCTAGCTGGATCCGAGAGAGCTAAAAGAACTGGTTCTGATGGTCTTCGTTTCAAAGAAGGTGTACACATTAATAAAGGCCTTCTTGCACTAGGTAATGTCATTAGTGCACTAGGGGATGAGAAAAAGCGAAAAGAGGGTGTACACGTCCCTTATCGGGATAGCAAACTCACTCGACTCTTACAGGATTCACTTGGTGGAAACAGTAAAACTGTCATGATAGCTTGCATTAGCCCTGCTGACATAAATGCTGAGGAAACTCTTAACACCCTCAAGTATGCAAACCGTGCACGAAATATTCAAAATAAGCCAGTTGCTAATCGAGATTTGATATCCAATGAGATGCAGCAAATGCGACAGCAATTAAAGTACTTGCAGGCTGAGCTCTGTTCCCGGGGAGGAACTCCAGCTGATGAAGTGCAGGTTCTTAGGGAAAGGATTGCTTGGCTTGAGGCAACTAACGGGCAACTGTATCGGCAACTGCATGAATATCGCAGTAGATGTGCATTTGTAGAGGGATGTGAAATTGATGAACCAGATGAACATATTTATCTTGTGAAAACTGATGGGCTTGAGAAGTGCCTTAAGAGCTCAGATTTATCAGACCATCCCATGGCTGGAAGTATGTCAGGTGAAGATTCAAGGGAAACTGATGAAGCAGTTAAAGAGTTGGAGCATGCACTATTGCAAAATACCTTGGATAAAGAGATGCATGAGTTAAATAAGCGCTTGGAGCAGAAAGAGTCTGAGATGAAGCTCATTGGAGTTGATACTGAAGCACTCAAACAGCACTTCGGGAAGAAAATTATGGAACTTGATGAAGAGAAAAGAAAAGTGCAGCATGAAAGGGACCGTTTGTTGCATGAAGTAGAGAACCTTTCTGCTAATTCAAATGGACTGGCACATAAAAATCAAGATTTTCGTGGCCAAAAATTGAAAGCATTGGAAGCACAGATCTTAGACCTCAAGAAGAAACAAGAAAGCCAAGTGCAGCTACTAAAGCAAAAGGAGAAGAGTGAAGAAGCTGCAAAAAGACTGCAAACTGAGATACAAAATATCAAGGCTCAAAAGGTTCAGTTGCAGCATAAAATGAAGCAAGAGGCAGAACAATTTAGGCAATGGAAGGCTTCTCGTGAGAAGGAGTTACTCCAGTTGAAAAAGGAAGGAAGAAGGAATGAGTATGAAAGACATAAACTTGAGGCTCTAAACCAGCGTCAAAAAATGGTCCTTCATAGGAAAGCAGAGGAAGCAACAATAGCTACGAAAAGGTTAAGAGAATTGTTGGAAGCCCGCAAATCTTCTCCACGAGACAACTCTGTTTATTCAAATGGAAATCCGCAGCATGGGCAGGTCAATGAAAAATCCCTCCAGAGGTGGCTTGATCAAGAGATGGAGGTCATGGTACATGTGCATGAAGTTCGTGCTAAATTTGACAAACAAAACCAAGTCCAAGCTGCATTGGAAGATGAGTTGGCCTTCCTGAAACAAGCAGATCAGTTTTCAGATGGGCAGAGTATCCTCACAGGAAAGAGCAGATATTCAAGACTGTTATCCATGTCACCGGACGTAAAAGCTGCAAGAATAGCTTCTCTTGAGAACATGCTGAGCATGTCTTCAGTTGCTCTGAAAGCCATGACTACACAACTTACAGAGGCAGAAGATAGGGAACGCACATTAAGTAACCGTGGACGTTGGAACCAGCTACGCTCAATGGGAGATGCAAAGAATGTGCTTCAGTATTTGTTCAATGCCACAGCAGATGCAAGGTGCCAATTGTCGGAAAAGAAAATGGAACTGAAGGACTTGAAAGAGCAACTTAATGAACTTGTAACTCTACTACAACAAAGTGAAGCACAGAGAAAAGAACTCGTAAAGGAGAAAACAATTAGAGAACAACCTATTGCTATCACATCGAATACATCAGCGTTGGAAAACTCACGGTCCTTGAAACACCTTGCGGATGAAATGAGCGGTCCATTGTCCCCAATGTCACTTCCTGCACCAAAGCTACTCAAATTCACCCCTGGAGTTGTTAATGGGTCAATCAGGGAGTCAGCTGCATTTCTAGATGATGCACGGAAGATGATACCCTTTGGAGAGTTGTCGACGAAGAGGCTAGCATCTATAGGACAAGCCGGAAAACTATGGAGGTGGAAGAGAAGTCATCATCAATGGCTGCTACAGTTTAAATGGAAGTGGCAGAAGCCATGGAAACTCTCAGAATGGATCAAACACAATGATGAAACCATCATGAGGTCAAGGCCTCAAACACGCGCTTTGATTAATGTGATGTGA 3099 0.4243 MESTPENCSVKVALHIRPLIADERQQGCTECVSVTNGKPQVQIGSHSFTFDHVYGNGGSPSADMFEECVAPLVDGLFQGFNATVLAYGQTGSGKTYTMGTGYSDNSQTGLTPRVMNALFNKIEMLKHQTEFQLHVSFIEILKEEVLDLLDTVSMGKSETSNSNGHSGKVTIPGKSPIQIRETSNGVITLAGSTEVAVSTLQEMAACLEQGSLCRATGSTNMNNQSSRSHAIFTITLEQMHKLHPVSSSNDTSDEDMGEEYLSAKFHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEETLNTLKYANRARNIQNKPVANRDLISNEMQQMRQQLKYLQAELCSRGGTPADEVQVLRERIAWLEATNGQLYRQLHEYRSRCAFVEGCEIDEPDEHIYLVKTDGLEKCLKSSDLSDHPMAGSMSGEDSRETDEAVKELEHALLQNTLDKEMHELNKRLEQKESEMKLIGVDTEALKQHFGKKIMELDEEKRKVQHERDRLLHEVENLSANSNGLAHKNQDFRGQKLKALEAQILDLKKKQESQVQLLKQKEKSEEAAKRLQTEIQNIKAQKVQLQHKMKQEAEQFRQWKASREKELLQLKKEGRRNEYERHKLEALNQRQKMVLHRKAEEATIATKRLRELLEARKSSPRDNSVYSNGNPQHGQVNEKSLQRWLDQEMEVMVHVHEVRAKFDKQNQVQAALEDELAFLKQADQFSDGQSILTGKSRYSRLLSMSPDVKAARIASLENMLSMSSVALKAMTTQLTEAEDRERTLSNRGRWNQLRSMGDAKNVLQYLFNATADARCQLSEKKMELKDLKEQLNELVTLLQQSEAQRKELVKEKTIREQPIAITSNTSALENSRSLKHLADEMSGPLSPMSLPAPKLLKFTPGVVNGSIRESAAFLDDARKMIPFGELSTKRLASIGQAGKLWRWKRSHHQWLLQFKWKWQKPWKLSEWIKHNDETIMRSRPQTRALINVM* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3370 1032 PANTHER KINESIN-LIKE PROTEIN KIN-4B 2 1031 - -
Lja4g3370 1032 MobiDBLite consensus disorder prediction 697 719 - -
Lja4g3370 1032 MobiDBLite consensus disorder prediction 703 719 - -
Lja4g3370 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 399 IPR027417 -
Lja4g3370 1032 MobiDBLite consensus disorder prediction 156 175 - -
Lja4g3370 1032 SMART kinesin_4 7 376 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja4g3370 1032 Coils Coil 853 894 - -
Lja4g3370 1032 Coils Coil 537 564 - -
Lja4g3370 1032 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 2 1031 - -
Lja4g3370 1032 Gene3D Kinesin motor domain 1 396 IPR036961 -
Lja4g3370 1032 Pfam Kinesin motor domain 16 368 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja4g3370 1032 Coils Coil 498 518 - -
Lja4g3370 1032 ProSiteProfiles Kinesin motor domain profile. 9 368 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja4g3370 1032 Coils Coil 810 830 - -
Lja4g3370 1032 Coils Coil 376 396 - -
Lja4g3370 1032 Coils Coil 580 638 - -
Lja4g3370 1032 CDD KISc_KIF4 8 369 - -
Lja4g3370 1032 PRINTS Kinesin heavy chain signature 79 100 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja4g3370 1032 PRINTS Kinesin heavy chain signature 264 282 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja4g3370 1032 PRINTS Kinesin heavy chain signature 219 236 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja4g3370 1032 PRINTS Kinesin heavy chain signature 318 339 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja4g3370 1032 ProSitePatterns Kinesin motor domain signature. 263 274 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3370 Lja-Chr4 63717994 63729473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3370 10 414 Calmodulin-binding Proteins AT5G65930 34.474 7.12e-56 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3370 - - gmx:100790341 1731.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3370 4 63717994 63729473 Lja4g3370 4 63717994 63729473 ECH