Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3368 ATGGCTGGTGAAGGAAGAGCAAGAGCAGCAGCGAAGAAGAGAGGCTCCACAGAGGGAGAAGAGGAGACGACAAAGTACAAAGGAATCAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAGATTCGTGAACCCAACCCCAAGCGTTCTCGAATTTGGCTCGGTTCCTACAACACCCCCATCGCGGCGGCGCGTGCTTATGACACCGCTGTTTACTGCCTCCGTGGCCCATCTGCTCGCCTCAATTTCCCGGAGCTGGCCGGGGAATTCGCCGCCGCTGCTGCCGCCGCCACCGACATGTCGGCGGAGTCCATCAAGAAAGTAGCCGCAGAAGTGGGTGCCAGGGTTGACGCCCTCCAGCTGCCTCACCAGCCCGCTCCCGCTCCCGCTCCCGCCGCCGCCGCCGCCGACCGGGAGGTGGTAGACCTTAACCAGATGCCTGAAGCTAACAACAATTAG 456 0.614 MAGEGRARAAAKKRGSTEGEEETTKYKGIRMRKWGKWVAEIREPNPKRSRIWLGSYNTPIAAARAYDTAVYCLRGPSARLNFPELAGEFAAAAAAATDMSAESIKKVAAEVGARVDALQLPHQPAPAPAPAAAAADREVVDLNQMPEANNN* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3368 151 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Lja4g3368 151 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Lja4g3368 151 SMART rav1_2 25 89 IPR001471 GO:0003700|GO:0006355
Lja4g3368 151 ProSiteProfiles AP2/ERF domain profile. 25 83 IPR001471 GO:0003700|GO:0006355
Lja4g3368 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 10 150 - -
Lja4g3368 151 SUPERFAMILY DNA-binding domain 25 84 IPR016177 GO:0003677
Lja4g3368 151 MobiDBLite consensus disorder prediction 1 26 - -
Lja4g3368 151 Pfam AP2 domain 24 75 IPR001471 GO:0003700|GO:0006355
Lja4g3368 151 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700|GO:0006355
Lja4g3368 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 150 - -
Lja4g3368 151 CDD AP2 24 85 IPR001471 GO:0003700|GO:0006355
Lja4g3368 151 MobiDBLite consensus disorder prediction 122 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3368 Lja-Chr4 63642780 63643549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3368 26 150 AP2-EREBP Transcription Factor Family AT3G50260 55.725 4.44e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g3368 AP2 8.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3368 K09286 - gmx:100784157 154.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3368 4 63642780 63643549 Lja4g3368 4 63642780 63643549 ECH