Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3367 ATGTGGGATCTCAATGACTCACCCGATCAGAGGAAGCATGAGGAATCAGAAGGGTGTTCTTCTCTCAAAACATCAACCATCGATGGCGGAGACGATGAGAAAGGGAAGAGGGTCGATGGATCTGTTTCCAATTCAAGTTCTTCTGCGGTGGTCATCGAGGATGGATCAGAAGAAGATGAACCAGAAGAAGGTGAGAGGGAAGGTACAAAAGCAGCGATGATGATGATGAAGAAGAGAAACAGCAGCAAGATATTCGGGTTCTCTGTCACCGGAGAAGTTGAAGAAGAGTCGTTTTTGTTGGACAGTGAAAACCCGCCGGTGACTCATCAATTTTTCCCGGTGGGGGAACATGAAAAGGCGGTTGTATCAGGTGGTGGCGGCGGCGGTGGTGGAGGCTCTTCCTTTCCTCGTGCTCACTGGGTGGGTGTGAAATTTTGCCAATCGGAAGCGCCGGGTGCCGGAAAATCAGTGGAGGTTTCGCAGCCGATGAAGAAGAGTAGAAGAGGACCAAGGTCTAGAAGCTCTCAGTATAGAGGAGTCACTTTTTACAGAAGAACAGGTCGATGGGAGTCACACATATGGGATTGTGGAAAGCAAGTGTATCTTGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCCTATGATAGAGCTGCGATTAAGTTCAGAGGAGTAGAAGCAGACATTAACTTCAACATAGAGGACTATGAAGAAGACTTGAAGCAGATGACCAATCTGACCAAGGAAGAGTTCGTGCACGTACTTCGCCGACAAAGCACTGGGTTTCCTAGAGGAAGCTCCAAATATAGAGGTGTAACATTGCACAAGTGTGGAAGATGGGAAGCACGAATGGGCCAGTTTTTAGGGAAAAAGTACGTTTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGGGCTTATGACAAAGCAGCAATAAAATGCAATGGCAAAGAGGCCGTCACAAATTTTGATCCCAGCATCTATGAGAATGAGCTTAATTCTGCAGAATCCTCAGGTAACGCTCCTAATGAACAACAACACAATCTGGATTTAAGTTTGGGCAATTCGGGTTCAAAGCCTGGTAGTAGTCAAGTGTTTGGGAATCACACAACAAATTCTGCAAATCATGAGCAGCACTTGCCATCTCAATCTAATTGGCAGAATGGGGGGAACAAGCCCAAGCTCATGAGTATACTACCGAAGCCTTTGCATAGAAGCAACAAGGAAGTGCATGGGGAGAGTGAAGCACTGAGGATGCTGAGTCAAACTCACCTCCATTCCTCAGCCTCTAATGAAATGCAAAGATATGTCCCCTACAGATCTTCTGGAGAGTCTCCAATGTTCCACAATTTTGCACATATTCACCCTCCAAATTTTCATTTTCCCAGCAGCAGCTATGGAGGTCGAGTTGGAAGTGATCTATCCTTATCATCGAGCGATCATCAACATTTACAACAGTGGCAATCCGGACCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAGATTATAAGACCCTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACACTCAAGAGACCATCCTAA 1596 0.4643 MWDLNDSPDQRKHEESEGCSSLKTSTIDGGDDEKGKRVDGSVSNSSSSAVVIEDGSEEDEPEEGEREGTKAAMMMMKKRNSSKIFGFSVTGEVEEESFLLDSENPPVTHQFFPVGEHEKAVVSGGGGGGGGGSSFPRAHWVGVKFCQSEAPGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSAESSGNAPNEQQHNLDLSLGNSGSKPGSSQVFGNHTTNSANHEQHLPSQSNWQNGGNKPKLMSILPKPLHRSNKEVHGESEALRMLSQTHLHSSASNEMQRYVPYRSSGESPMFHNFAHIHPPNFHFPSSSYGGRVGSDLSLSSSDHQHLQQWQSGPPHYLATAAASSGFPPQIIRPSSSQGWLQKNGFHTLKRPS* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3367 531 SUPERFAMILY DNA-binding domain 175 233 IPR016177 GO:0003677
Lja4g3367 531 MobiDBLite consensus disorder prediction 333 393 - -
Lja4g3367 531 Pfam AP2 domain 267 316 IPR001471 GO:0003700|GO:0006355
Lja4g3367 531 Pfam AP2 domain 176 224 IPR001471 GO:0003700|GO:0006355
Lja4g3367 531 MobiDBLite consensus disorder prediction 1 69 - -
Lja4g3367 531 CDD AP2 176 233 IPR001471 GO:0003700|GO:0006355
Lja4g3367 531 CDD AP2 267 327 IPR001471 GO:0003700|GO:0006355
Lja4g3367 531 SUPERFAMILY DNA-binding domain 267 327 IPR016177 GO:0003677
Lja4g3367 531 MobiDBLite consensus disorder prediction 152 176 - -
Lja4g3367 531 PRINTS Ethylene responsive element binding protein signature 307 327 IPR001471 GO:0003700|GO:0006355
Lja4g3367 531 PRINTS Ethylene responsive element binding protein signature 269 280 IPR001471 GO:0003700|GO:0006355
Lja4g3367 531 ProSiteProfiles AP2/ERF domain profile. 268 325 IPR001471 GO:0003700|GO:0006355
Lja4g3367 531 MobiDBLite consensus disorder prediction 1 19 - -
Lja4g3367 531 Gene3D AP2/ERF domain 175 234 IPR036955 GO:0003700|GO:0006355
Lja4g3367 531 Gene3D AP2/ERF domain 267 326 IPR036955 GO:0003700|GO:0006355
Lja4g3367 531 ProSiteProfiles AP2/ERF domain profile. 176 232 IPR001471 GO:0003700|GO:0006355
Lja4g3367 531 MobiDBLite consensus disorder prediction 512 531 - -
Lja4g3367 531 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 528 - -
Lja4g3367 531 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 528 - -
Lja4g3367 531 SMART rav1_2 268 331 IPR001471 GO:0003700|GO:0006355
Lja4g3367 531 SMART rav1_2 176 238 IPR001471 GO:0003700|GO:0006355
Lja4g3367 531 MobiDBLite consensus disorder prediction 333 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3367 Lja-Chr4 63526302 63530233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3367 1 365 AP2-EREBP Transcription Factor Family AT4G36920 66.313 8.34e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lja4g3367 AP2 3.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3367 K09284 - gmx:100792442 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3367 4 63526302 63530233 Lja4g3367 4 63526302 63530233 ECH
Lja2g0319 2 2875296 2878754 Lja4g3367 4 63526302 63530233 PCT