Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3353 ATGTCAACAACAACCATCAAAGCTTCTTACACCATCATCCCCGCCGAGCACACTCCAAACACCGACCTATGGCTGTCTCCCAGTGATCAAGTCACGCGTTGGACTCATGCTTCCACCATCTACGTTTACAAAGAAGCCCCCAACCACGACGCCATGGACACAATGAGAGATTCTCTCAGCAAGATTCTTGTCCATTACTACCCCCTCGCGGGAAGACTCAGCTGGATCGAAGGTCACCGTCTGAAACTCAATTGCAACGCCAAGGGTGCCATATTGCTCGAAGCCGAATCGACGAAAACACTCTCTTCTTATGGAGACTTCACGCCGAGTGACACCATAAAAAATGAGCTCACTCCAACCGTCGATTACACCCAACCCATAGAGGACCTTCCTCTATTGATAGTGCAAGTGACCAGGTTCAAAGGAACCAAAGAGGGCCTTGTCATAGGCATAGCTCTTAACCATGTTTTATGCGACGGCCTTGCCGCCATTCGTTTCAAAAACTCGTGGGCCAAGCTTTGTAAAGGAGATGTCGAGTTAGATCACACTGAGAAGTTCCCCTTCCTCGATCGGACGGTGATGAACTCCTCCACGCGCCCGCGCTTCGACCACCCCGAGCTGAAGCCGCTCCCGCTCCTACTAGGCAGCACTGACCCCGTTGCAGAGCGGGAACACGAGAGGGCTGTCGCGGTGCTGAGACTAACAAAGGAGCAAGTTGTATCTGCACACGTTTGGAAATGTCTAACAAAGGCGCGCGGGCTTGATGGCGCTCAGCCGACAGTGGTTAGGGTGACTGCGGATATTCGTAGCAGGTTGAACCCGCCTCTCCCTATGAACTATTTCGGGAACGCGCTGGCCGTGTCGTTGACTCCAACTTGTTTTGCAAGGGATGTATTGTCAAACCCGTTGAGGTTCTGTGCGAGGAAGATAAGGGAAGCAGTGGAGTTGCTCAAGGATGATTATGTGAGGTCTCAACTAGATTACATTCAGTGTCAGGAGCAGATAGATTCGATTCGAGCTTCACATTTGGAACCTGGGAAGCGTAAAAATGCACCATTTTATGGTAACCCGAACCTTATGATTGTGAGCTGGATGAGCATGCCTGTGTACGAAGCAGACTTTGGGTGGGGGAAGCCTGCGCATTTCGGTCCTGCAGCTGTGTTTCCTGATGATATAGTGTATATAAATCGGAGCTCCAATGGGGATTGGTCAATTCCCGTGTGTGCGCATTTGCAGAAAAGACACATGGAGCTTTTCAACAAGTTTTTTTACCAGGATATATATGAAATGAATTCTTTGTTTGTGTGA 1308 0.4985 MSTTTIKASYTIIPAEHTPNTDLWLSPSDQVTRWTHASTIYVYKEAPNHDAMDTMRDSLSKILVHYYPLAGRLSWIEGHRLKLNCNAKGAILLEAESTKTLSSYGDFTPSDTIKNELTPTVDYTQPIEDLPLLIVQVTRFKGTKEGLVIGIALNHVLCDGLAAIRFKNSWAKLCKGDVELDHTEKFPFLDRTVMNSSTRPRFDHPELKPLPLLLGSTDPVAEREHERAVAVLRLTKEQVVSAHVWKCLTKARGLDGAQPTVVRVTADIRSRLNPPLPMNYFGNALAVSLTPTCFARDVLSNPLRFCARKIREAVELLKDDYVRSQLDYIQCQEQIDSIRASHLEPGKRKNAPFYGNPNLMIVSWMSMPVYEADFGWGKPAHFGPAAVFPDDIVYINRSSNGDWSIPVCAHLQKRHMELFNKFFYQDIYEMNSLFV* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3353 435 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 6 239 - -
Lja4g3353 435 PANTHER SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASE 239 427 - -
Lja4g3353 435 Gene3D - 218 426 IPR023213 -
Lja4g3353 435 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 239 427 - -
Lja4g3353 435 Pfam Transferase family 231 424 - -
Lja4g3353 435 Pfam Transferase family 5 222 - -
Lja4g3353 435 PANTHER SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASE 6 239 - -
Lja4g3353 435 Gene3D - 2 209 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3353 Lja-Chr4 63350521 63351912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3353 6 425 Monolignol Biosynthesis Gene Families AT5G48930 33.857 1.50e-86 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3353 K13065 - gmx:100787038 571.622