Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3352 ATGGCTATCACTAAGGAAGAGGAACAACAAAACCAATTCAATGGCCACAAAGATCTCCCTCGTAAGAGTCTCCTTCAGAGTGATGCACTCTATCAGTATATACTTGAAACAAGTGTCCATCCCAGAGAGCATGCCAGCTTGAAGGAGCTGCGTGAGATGACAGAAAAACACCCTGGGAACATGATGGCTACGCCACCTGACGAAGGACAACTATTAAGGATGTTAATAAAGCTCATCAACGCCAAGAACACAATGGAAATCGGTGTCTACACTGGCTACTCTCTGCTCTCCACTGCCCTCGCTCTTCCCGAAGATGGAAAGATCTTGGCTTTGGATATGAACCGCGAATACTATGATTTGGGATTACCCATAATTGAGAAAGCTGGAGTGGCTCACAAGATTGACTTTAGAGAAGGACCCGCCCTTCCTCTTCTTGACAAACTACTTAGGGATGAAAATAATAAAGGAACATTCGATTTCATTTTTGTGGACGCTGATAAGGATAACTACTTGAAATACCACAAGAGGGTGATTGAGCTTGTGAAGGTTGGGGGGTTGATCGGGTACGACAACACCCTATGGAATGGATCTGTGGCGGCCCCACCTGATGCGCCTCTTAAGGATTACATCAAGCATTATCGCGATTATGTGCTTGAGCTCAACAAGTATCTGGCTCTTGATTCTAGGATTGAGATTTGCCAGCTCTCTGTGGGTGATGGGATTACCTTGTGTCGCCGCATCATGTAA 747 0.4552 MAITKEEEQQNQFNGHKDLPRKSLLQSDALYQYILETSVHPREHASLKELREMTEKHPGNMMATPPDEGQLLRMLIKLINAKNTMEIGVYTGYSLLSTALALPEDGKILALDMNREYYDLGLPIIEKAGVAHKIDFREGPALPLLDKLLRDENNKGTFDFIFVDADKDNYLKYHKRVIELVKVGGLIGYDNTLWNGSVAAPPDAPLKDYIKHYRDYVLELNKYLALDSRIEICQLSVGDGITLCRRIM* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3352 248 PANTHER O-METHYLTRANSFERASE-RELATED 2 247 - -
Lja4g3352 248 PANTHER CAFFEOYL-COA 3-O-METHYLTRANSFERASE 2 247 - -
Lja4g3352 248 Gene3D Vaccinia Virus protein VP39 12 248 IPR029063 -
Lja4g3352 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 246 IPR029063 -
Lja4g3352 248 CDD AdoMet_MTases 86 187 - -
Lja4g3352 248 Pfam O-methyltransferase 36 247 IPR002935 GO:0008171
Lja4g3352 248 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 23 247 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3352 Lja-Chr4 63335426 63336930 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3352 6 247 Monolignol Biosynthesis Gene Families AT4G34050 75.207 3.15e-138 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3352 K00588 - gmx:100799303 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3352 4 63335426 63336930 Lja4g3352 4 63335426 63336930 ECH