Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3348 ATGGATTGGGTACGAGGAGATTTGATTGGTCGTGGAAGCTTTGCCACCGTCAGTTTAGCTATACCCACTGGAAGTTCTTCTTCAACCCGTTTTCCTCTTCCGACCGTCGTGAAATCCGCCGAGGCTTCCACCTCTTCTTCTCTGGAGAATGAGAAAAACGTTCTTGATCGGTTGGGTTCATCATGCCCAAGAATCATTCGGTGTTTCGGCGGTGATCGCACCTTTGAAAACGGTGAGGAGAGGTTCAACTTGTTCCTTGAGTACGCCGCCGGTGGAAGCCTTGCCGATCAGGTGAAATTCCACGGTGGTCGGATTCCGGAGAATAAAGTTCGGAGTTACACTAGGTCCGTTGTGGAGGGGCTTCTGCATATTCATAGCAATGGGTTTATTCACTGTGATATCAAGCTTCAGAACATTCTGGTGTTCGGCGATGGTGAAGTGAAGATTGCTGATTTCGGTTTGGCGAAGGAGGTAGGGGTGGAACAGGAACAGGGGAAGGGGTTTGAATGCAGGGGGACGCCGCTGTTTATGTCGCCGGAATCGGTTAAATCCGGCGAGAATTTACCGCCGGCGGATGTTTGGGCTCTGGGGTGTGCGGTGGTGGAGATGGTGTCCGGGAAGCCGGCGTGGAATGTTGAGAAGGATTCGAGTATGTGGTCGTTGTTGCTTCGAATTGGTGCCGGAGAAGAGTCGCCGGAGATACCAGAGGAGGTATCGGAAGAGGGGAGGGATTTTCTTGAGAAGTGTTTCGTGAAGGATCCGAGGAAGAGGTGGACGGCGGAGATGCTCTTGAAGCACCCTTTTGTTGCGGCGGTTCCGTTGAAGGAGTCGCCGAGGTGCCACTTTGATTTCCCAGATTGGGTTTCTAGCGTTCCGAGCTCGCCGGAATCTGAAGAGACTTGCCTGTGGGATTTTCAGTCGCCGCCGTGTTCGCGTTCTCCGGTGGACCGGCTTCAGCAACTCGTGACGGTTCAATCGCCGGTAAATTGGTCGGTATCAGATAGTTGGTCTACTGTTAGGTGA 1023 0.5279 MDWVRGDLIGRGSFATVSLAIPTGSSSSTRFPLPTVVKSAEASTSSSLENEKNVLDRLGSSCPRIIRCFGGDRTFENGEERFNLFLEYAAGGSLADQVKFHGGRIPENKVRSYTRSVVEGLLHIHSNGFIHCDIKLQNILVFGDGEVKIADFGLAKEVGVEQEQGKGFECRGTPLFMSPESVKSGENLPPADVWALGCAVVEMVSGKPAWNVEKDSSMWSLLLRIGAGEESPEIPEEVSEEGRDFLEKCFVKDPRKRWTAEMLLKHPFVAAVPLKESPRCHFDFPDWVSSVPSSPESEETCLWDFQSPPCSRSPVDRLQQLVTVQSPVNWSVSDSWSTVR* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3348 340 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 299 - -
Lja4g3348 340 SMART serkin_6 3 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3348 340 SUPERFAMILY Protein kinase-like (PK-like) 3 309 IPR011009 -
Lja4g3348 340 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524
Lja4g3348 340 Pfam Protein kinase domain 6 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3348 340 CDD STKc_MAPKKK 2 269 - -
Lja4g3348 340 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 299 - -
Lja4g3348 340 Gene3D Transferase(Phosphotransferase) domain 1 2 296 - -
Lja4g3348 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Lja4g3348 340 ProSiteProfiles Protein kinase domain profile. 3 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3348 Lja-Chr4 63257817 63259227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3348 1 340 MAP Kinase Kinase Kinase AT5G67080 54.167 1.80e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja4g3348 Pkinase 5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3348 - - aprc:113858661 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3348 4 63257817 63259227 Lja4g3348 4 63257817 63259227 ECH
Lja2g0331 2 2985045 2986386 Lja4g3348 4 63257817 63259227 PCT