Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3346 ATGGATGTGGACATAGTGAAAACCCCTTCAAATGACGACATGATGGCAATGATGATGCAAATGGAAAAGTTCCCTGAATTCTCTGAACCTTTTTATACCAACGAGTTATTACCCGGTAATGGAAGCACCACCACCATTTTCAACACTTTGATTGACCCTCCACCACCTTCCAACAATGTCAACAACCTCTTCACCAACCATATCCAACAACAACACATGACACCACCACCGCCGCCACTTCAACAACAATTCAACGAGGTTGTTCCATTCAGGAGTAGTGCTTCAAACGCTTCATTTCCTTACCCAGCTGAGAAAAGAAACTCCATGGCTGCCATGAGGGAAATGATCTTCCGGATCGCGGTGATGCAACCGGTTCACATCGACCCGGAAACTATCAAGCCACCAAAGCGGAGGAACGTGAAGATCTCCAAAGATCCTCAGAGCGTGGCCGCGAGGCACAGGAGGGAGAGGATAAGCGAGAGGATAAGGATCCTCCAGAGATTAGTCCCGGGTGGAACCAAAATGGACACGGCTTCAATGCTTGATGAAGCCATTCACTATGTGAAGTTCTTGAAGAAACAGGTGCAGACGCTCGAACAAGCTGGGGCTACTAGACATGTTGGAGGTGGCGGTGGCGGTGGCAGTGTTGGGTTCCCACTTATGTCGAATTCCAGTGTGAATTATTCAGCTTTGTTGATGAAGGGTTGCCAACCTTTTCAAATGATGGGTTCTAGTTCTAAGCAATTGCTTAGCTGA 756 0.4762 MDVDIVKTPSNDDMMAMMMQMEKFPEFSEPFYTNELLPGNGSTTTIFNTLIDPPPPSNNVNNLFTNHIQQQHMTPPPPPLQQQFNEVVPFRSSASNASFPYPAEKRNSMAAMREMIFRIAVMQPVHIDPETIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATRHVGGGGGGGSVGFPLMSNSSVNYSALLMKGCQPFQMMGSSSKQLLS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3346 251 SMART finulus 148 197 IPR011598 GO:0046983
Lja4g3346 251 Gene3D - 141 206 IPR036638 GO:0046983
Lja4g3346 251 Pfam Helix-loop-helix DNA-binding domain 151 191 IPR011598 GO:0046983
Lja4g3346 251 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 242 IPR045843 GO:0003700|GO:0006355
Lja4g3346 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Lja4g3346 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 201 IPR036638 GO:0046983
Lja4g3346 251 Coils Coil 181 201 - -
Lja4g3346 251 PANTHER TRANSCRIPTION FACTOR HEC2 1 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3346 Lja-Chr4 63201979 63202734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3346 84 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 66.892 2.82e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g3346 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3346 - - gmx:100800816 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3346 4 63201979 63202734 Lja4g3346 4 63201979 63202734 ECH