Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3344 ATGGAGCAAAGGAAGCTTGTGGTTTTGGGTATCCCATGGGAAGTGGATACTGATGGCTTGAAAGAATATATGAGCAAATTTGGTGAGCTGGAAGATTGTATTGTTATGAAGGAGCGGGCAACTGGTCGGTCTCGAGGTTTTGGATATGTTACATTTACATCAGTGGATGATGCTAAGAATGTATTATCCATTGAACACAATCTGGGTAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAAGGCACCGGTAAAAAAAGTTAACAGAATATTTATAGCCAGAATCCCACCATCAGTAACAGAAGCAACCTTCAGAAGTCATTTTGAGAAATATGGTGATATTACAGATCTATACATGCCAAAGGATCAAAGATCAAAAACGCATCGTGGAATTGGTTTTATCACTTATGCAAATGCAGATTCTGTAGAGAATTTGATGAAAGAAACCCATGAACTGGAAGGTTCTACTGTGGTCGTTGATCGAGCAACGCCTAAGGAAGATGATTTCAAGCCAATTGGGAGAATGCCACAGGGAGGATCAATGGGGAGAATGTCACAGGGAGGATATGGTGCATACAATGCATATATTTCTGCAACAACTAGATACGCAGCACTAGGTGCTCCTACTTTATATGACAATCCGGGTTCAGTTTATGGAAGGGGAGAACCTGCTCGTGAAGTGGGCAAAAAGATTTTTGTTGGTCATCTTCCCCAAGAGGCTACCACTGAGGATCTTCGCCAGTATTTTGGAAGATTTGGCCATATATTAGATGTTTATATTCCCAGGGATGCCAAGAGATCAGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCTGAAGATGGTGTTGCGGATCGCGTCGCTCGAAGACCTCATGAGATTTGTGGACACCAGGTGGCCATAGATTCAGCAACACCTCTTGATGATGCAGGGCCCAGTGGGAATTTTATGTTGAATAGCATGGATTCTTTTGGGGGATTTGGTGGTCCTGTGCGACCTTATGGGAGAATGTATGGCAGCCTAGACTACGATGATTGGGGTTATGGAGTTCCCAGGGGGAGGCCGCCATCAAGAGCGGATTGGAGGTATAGACCATACTAA 1110 0.4396 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTVVVDRATPKEDDFKPIGRMPQGGSMGRMSQGGYGAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRPHEICGHQVAIDSATPLDDAGPSGNFMLNSMDSFGGFGGPVRPYGRMYGSLDYDDWGYGVPRGRPPSRADWRYRPY* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3344 369 SUPERFAMILY RNA-binding domain, RBD 232 332 IPR035979 GO:0003676
Lja4g3344 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 309 IPR000504 GO:0003723
Lja4g3344 369 Gene3D - 1 85 IPR012677 -
Lja4g3344 369 SUPERFAMILY RNA-binding domain, RBD 88 195 IPR035979 GO:0003676
Lja4g3344 369 SMART rrm1_1 93 164 IPR000504 GO:0003723
Lja4g3344 369 SMART rrm1_1 5 76 IPR000504 GO:0003723
Lja4g3344 369 SMART rrm1_1 234 305 IPR000504 GO:0003723
Lja4g3344 369 Gene3D - 86 201 IPR012677 -
Lja4g3344 369 Gene3D - 229 313 IPR012677 -
Lja4g3344 369 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 369 - -
Lja4g3344 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 154 IPR000504 GO:0003723
Lja4g3344 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 290 IPR000504 GO:0003723
Lja4g3344 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 63 IPR000504 GO:0003723
Lja4g3344 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Lja4g3344 369 PANTHER OS01G0945800 PROTEIN 3 369 - -
Lja4g3344 369 SUPERFAMILY RNA-binding domain, RBD 3 84 IPR035979 GO:0003676
Lja4g3344 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3344 Lja-Chr4 63160270 63169064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3344 17 291 Eukaryotic Initiation Factors Gene Family AT2G36660 23.297 3.90e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3344 K14411 - gmx:100795240 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3344 4 63160270 63169064 Lja4g3344 4 63160270 63169064 ECH