Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3339 ATGTCGCAGCGGTCGACGCCGGCACCGTTTTTGGTGAAGACGTATCAGCTGGTGGAGGATCCTGCCACGGACGACGTGGTTTCATGGAGTGAAAGTGGTGGCACGTTTGTGGTGTGGAAACATGCGGATTTTGCTAGGGACTTGCTTCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTTGTTCGCCAGCTCAATACTTACGGGTTTCGAAAGATCGTTCCTGACAAATGGGAATTCGCGAACGAGTGCTTCAAGCAAGGCCAAAAGGAGCTGCTAGTGGAAATCAAGCGGCGGAAGACGGTGTCAGTAACCGGCAAACCTGGTGGCGCAAACTCGGCGTCAAACTCTGGCGGCGATGACTTGGGTTCAACGTCGACGGGATCAGTGGACGCAGCGGCGGTGCCAACTGATTTATCATGCGAGAACGAGAAATTGAAGATAGACAACGAGAAATTGAGCTGCGAGCTGGAGCAAGCAAAAAAGCAATGCGACGAGCTCGTGGCGTTTCTGAGGGAGACACTCGATGTGGGGCCCGATCAGATAAACTGCATGATTCGGCAAGGAACTAATGGGTCCAGCAACGATGTGGTGGTAGATGAGTGTAGTGGGGAGAATTTGAAATTGTTTGGTGTATGGCTGAATGGAGAAAAGGGAGAGAAAGTGATTGCCACACCCACCATTACCAAGGGTAACTGCCGCAAGAGATCGAGGGCGTGA 720 0.5181 MSQRSTPAPFLVKTYQLVEDPATDDVVSWSESGGTFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANECFKQGQKELLVEIKRRKTVSVTGKPGGANSASNSGGDDLGSTSTGSVDAAAVPTDLSCENEKLKIDNEKLSCELEQAKKQCDELVAFLRETLDVGPDQINCMIRQGTNGSSNDVVVDECSGENLKLFGVWLNGEKGEKVIATPTITKGNCRKRSRA* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3339 239 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g3339 239 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 225 - -
Lja4g3339 239 Coils Coil 143 170 - -
Lja4g3339 239 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g3339 239 Gene3D - 2 101 IPR036388 -
Lja4g3339 239 MobiDBLite consensus disorder prediction 104 129 - -
Lja4g3339 239 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 225 IPR027725 -
Lja4g3339 239 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g3339 239 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g3339 239 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g3339 239 MobiDBLite consensus disorder prediction 106 129 - -
Lja4g3339 239 Gene3D - 133 174 - -
Lja4g3339 239 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Lja4g3339 239 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3339 Lja-Chr4 63108652 63111935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3339 2 221 HSF AT4G36990 55.020 2.24e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja4g3339 HSF_DNA-bind 4.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3339 K09419 - gmx:100801897 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3339 4 63108652 63111935 Lja4g3339 4 63108652 63111935 ECH
Lja2g0341 2 3122212 3124319 Lja4g3339 4 63108652 63111935 PCT