Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3338 ATGGCTGTTCCTCCTGTTCCAATTGAGGGAGCATTGACATCATTACCTGATCAGGAACAAGAGAATTCTATTATAGTATCAGCTCTTACCCATGTTATTTCATCATCTTCTTCTACTATGAGGACTAACACTATTCAATTTCATGGTGATTATCTCCCAATTCTTGATGGTCCCAAAGTACAACAAGGGGAATTAGAATCAGGAATGGTACTAGGAGGCAGAGCCATGTCATGGGGAGCAGGTGGGTCCCGCAATGCTGACACGTGTCAGGTGTGCCAGATCAGCGGCTGCCTGGGGTGCAACTTCTTCTGGCCGCAGCAGGTGGAGGCGGAGGAGAAGGGGAGGATCATGAGGAGGAAGAAGAAGAATTACAGGGGAGTGAGACAGAGAGCTTGGGGGAAATGGGTGGCGGAGATTCGAGACCCGCGTAGAGCAACTCGTGTATGGCTGGGGACGTTTGAGACGGCGGAGAAAGCTGCCAGGGCGTATGATAAAGCTGCCATTGAGTTTCATGGGGAGAAAGCTAAGACCAATTTCGCGTTCTCTGAGTATGCTGCTGCAAATATTGCACAAGAGAAGCAGCAGAGTGTGGTGGTGGCAGAGCAAAAGCAGGGTGGTGCAGGGTTGAATTACAACCAAACAAAACCCAACAACGTTTCATCATCTTCATCTCAAACGCAGGCCACCTGA 690 0.4942 MAVPPVPIEGALTSLPDQEQENSIIVSALTHVISSSSSTMRTNTIQFHGDYLPILDGPKVQQGELESGMVLGGRAMSWGAGGSRNADTCQVCQISGCLGCNFFWPQQVEAEEKGRIMRRKKKNYRGVRQRAWGKWVAEIRDPRRATRVWLGTFETAEKAARAYDKAAIEFHGEKAKTNFAFSEYAAANIAQEKQQSVVVAEQKQGGAGLNYNQTKPNNVSSSSSQTQAT* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3338 229 CDD AP2 122 180 IPR001471 GO:0003700|GO:0006355
Lja4g3338 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 17 202 - -
Lja4g3338 229 MobiDBLite consensus disorder prediction 206 229 - -
Lja4g3338 229 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Lja4g3338 229 Gene3D AP2/ERF domain 122 181 IPR036955 GO:0003700|GO:0006355
Lja4g3338 229 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Lja4g3338 229 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Lja4g3338 229 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Lja4g3338 229 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Lja4g3338 229 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 202 - -
Lja4g3338 229 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3338 Lja-Chr4 63091511 63092200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3338 19 187 AP2-EREBP Transcription Factor Family AT4G34410 44.221 4.11e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g3338 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3338 - - lja:Lj0g3v0306799.1 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3338 4 63091511 63092200 Lja4g3338 4 63091511 63092200 ECH