Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3334 ATGGTGGTGGTTGATGAAAGAAGAGGGGATTGGATGGTTAACAACAAGGAACATAATGATCAAGGTGTAACTGTGGCATTTCATGGGGAGGACATGTACGAGGATGCACCTCATGCCCATTATTCTATGATGTCTCCTTTACACATGGCATTATCTGATGAAGCACAGTCACAGAAGCATGGAAGTGGAAGCCCCATTAGGGCTGCAACAGATGGAACATCCTCTCGTGGTGAGGCGTTGTCAACTGCTGTGATTCGAGCACAGGAGATTCAATCAAAGTTGGTACCGGATTTCCCTAGTTTTGTGAAGTCCTTGGTCAGATCACATGTTGCTAGTTGTTTTTGGATGGGTCTGCCTGTGGCGTTCTGTAAAAGGCACTTACCGGATAAAGATACAACTATTACTTTGGAAGATGAATCTGGTAAAGAGTACAAGACGAAATACATTGCATGTAAGACAGGATTGAGTGCTGGTTGGAGGCAGTTTTCTGCTGTGCATAAATTGCAGGAGGGTGATGTGGTGGTCTTCCAATTAGTTGAACCTACCAAATTTAAGGTTTATATAGTAAGAGCTAATAAGTTGAGAGAACTTGATGGAGCCCTTCCGAATCTTGAGACTTCTATAAAACAAAAAGTTGGAGGCAGAAATAGCACAAATACTGAAGCTGTACCATCTAATAGCTCAAAGAGAAAGCATGGTAAATCTGTCCCACAAGAGGACCAAAAGAAAAAGAAGACCATTGTGTCAAGAATGGGTCCTAAGGCTAGACAATCTGCAGAACCATCTGAAAACAGTAGTGAGGATGCTCTCTCAGAAATACTAGAGGGCTTTAGAATGCTTCAATTCAAAGACATAAGAGGATTTGGACATTTCAGCATCCTAGTAGATGGAGTGGCAATAGATGCTGAACTCTCTAACGAAGTCCGAAACAAGTACTACAAGCTCTGCCACAGTCAGCAAGCATTTCTTCATGAAAATCTCATCAAGGGTATGGACTACATGCTGATTGCAGGAATAATATCTGAAACTGTCAACATTGCTGATGCCATAAAAGTTAGTGTGATGTCCACCCCGCGTGTTGAATTTACTAATTGGGATAAAACTTTGCATGCCTTTGAGCTTCTGGGCATGAATGTTGCATTTTTAAGAGCTCGATTGCGCAGGCTTGTGAGCCTTGCTTATGAAACAGAAGATGCCTCGGAGGCCAGAAGATACTTGGCCTATAGAGCTGAGAACAGTCGAGCAGATGAAGAACTGAAGAACATGGAAACGAAGCTCGAAGAGTTGAAGGGAGCTTGTAATGATTTTGGTGCTTATCTTGAGAGCTTGAAGTGCAAAGCTGAAAGCTATCAGCACCAGTTCCAGAAAGAAGTTGCTGCTCCTTGGTGA 1389 0.4276 MVVVDERRGDWMVNNKEHNDQGVTVAFHGEDMYEDAPHAHYSMMSPLHMALSDEAQSQKHGSGSPIRAATDGTSSRGEALSTAVIRAQEIQSKLVPDFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTITLEDESGKEYKTKYIACKTGLSAGWRQFSAVHKLQEGDVVVFQLVEPTKFKVYIVRANKLRELDGALPNLETSIKQKVGGRNSTNTEAVPSNSSKRKHGKSVPQEDQKKKKTIVSRMGPKARQSAEPSENSSEDALSEILEGFRMLQFKDIRGFGHFSILVDGVAIDAELSNEVRNKYYKLCHSQQAFLHENLIKGMDYMLIAGIISETVNIADAIKVSVMSTPRVEFTNWDKTLHAFELLGMNVAFLRARLRRLVSLAYETEDASEARRYLAYRAENSRADEELKNMETKLEELKGACNDFGAYLESLKCKAESYQHQFQKEVAAPW* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3334 462 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 49 399 - -
Lja4g3334 462 SUPERFAMILY DNA-binding pseudobarrel domain 96 192 IPR015300 -
Lja4g3334 462 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 49 399 IPR044837 -
Lja4g3334 462 MobiDBLite consensus disorder prediction 232 247 - -
Lja4g3334 462 MobiDBLite consensus disorder prediction 208 267 - -
Lja4g3334 462 ProSiteProfiles B3 DNA-binding domain profile. 101 192 IPR003340 GO:0003677
Lja4g3334 462 Coils Coil 405 432 - -
Lja4g3334 462 Pfam B3 DNA binding domain 101 191 IPR003340 GO:0003677
Lja4g3334 462 Gene3D - 80 194 IPR015300 -
Lja4g3334 462 MobiDBLite consensus disorder prediction 209 231 - -
Lja4g3334 462 CDD B3_DNA 99 190 IPR003340 GO:0003677
Lja4g3334 462 MobiDBLite consensus disorder prediction 53 74 - -
Lja4g3334 462 SMART B3_2 101 192 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3334 Lja-Chr4 63052185 63056616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3334 83 196 B3 DNA Binding Superfamily AT5G42700 52.632 2.34e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja4g3334 B3 1.5e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3334 - - gmx:100819237 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3334 4 63052185 63056616 Lja4g3334 4 63052185 63056616 ECH