Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3318 ATGGGTCTATGCACTTCCAAACCACACTCTCCTCCAAATTCCAAACCCCATTCACCTTCCAATCACACTGAACCAGACACCACTTCCACTACCAAGCCTCATTCCAATGGCCAAAACCCTACTCCCCACACACCTACCCACCTCAAAACCGGTAAGAAATCTCCCCTTTTCCCCTTTTACAGTCCCAGCCCTGCCCACCATTTATTCTCCGGTAAATCTCCGGCTGCCGGAACTCCCCGGCGGTTTTTCCGGCCGCCGTCGCCGGCCAAGCACATAAGGGCCGTGCTTGCTCGCCGGCACGGGTCCGTTAAGCCGAATGAGGTCGCCATTCCTGAAGGGAGTGAAGCTGAGGTTGCTGTTGCTTTGGACAAGAGTTTTGGATTCTCCAAGCATTTTGGGCACAAGTTTCAGCTTGGGGATGAGGTTGGTAGAGGCCACTTTGGCTACACTTGTGCTGCTAAATTCATCAAGGGTGATCTCAAAGGTCACCAGGTTGCTGTCAAGATCATCCCAAAATCCAAGATGACTACTGCCATCGCTATTGAGGATGTAAGAAGGGAAGTGAAAATATTGAGAGCTTTGACTGGACACAAGAATCTGATACAATTCTACGATGCATATGAAGACCATGATAATGTCTATATTGTAATGGAATTGTGCGAAGGAGGGGAGCTCTTGGACAGAATATTATCAAGAGGTGGGAAATATACTGAGGAAGATGCAAGAACTGTAATGACACAAATACTGAATGTTGTTGCATTTTGCCATCTACAGGGTGTTGTGCATCGTGATCTTAAACCTGAGAACTTCCTGTTCACATCCAAAGATGAGAACTCAGAGCTGAAGGCCATAGATTTTGGGTTGTCAGATTTTGTTAAACCAGATGAAAGGCTAAATGATATTGTTGGTAGCGCATACTATGTGGCTCCTGAAGTTCTGCATAGAGCTTACAGTTCAGAGGCTGATGTCTGGAGCATTGGTGTGATTGCATACATTTTATTATGTGGCAGCCGTCCATTTTGGGCACGGACTGAATCTGGGATCTTTCGTGCTGTATTGAAAGCTGACCCAAGTTTTGATGAACCTCCTTGGCCCTCTCTGTCTGATGAGGCAAAGGATTTTGTTAAGCGACTACTAAATAAAGATCCAAGGAAAAGAATGACTGCTGCACAGGCCTTAGGTCATCCGTGGATTAAAAATTATAAGGATGTAAAAGTACCGTTGGATATTATAGTGCTCAAGCTCATGAGGGTGTACATGCGTTCCTCCTCTCTACGAAAAGCAGCTTTACGGGCTCTGTCTAAAACGTTAGCTATTGATGAGCTGAATTATTTGAGGGAGCAATTTGCAGTTTTAGAGCCTAATAAAAATGGCACCATTAGCTTGGACAATATCAAAGCGGCCTTGATGAAGAATGCAACAGATGCTATGAAGGAGTCACGCATTACAGATTTTCTGGCATCACTTAATGCATTACAATATAGAAGGATGGATTTTGATGAGTTCTGTGCAGCTGCACTTAGTGTTCATCAACTTGAAGCCCTTGACCGGTGGGAGCAACATGCACGCTGTGCCTATGAACTTTTTGAAAAAGATGGAAATAGGGCTATTATGATTGAGGAACTAGCTTCGGAGCTTGGCCTTGGTCCATCTGTCCCTGTTCACGCTGTTCTTCATGACTGGATCAGGCACACAGATGGAAAGTTGAGCTTCCTTGGGTTTGTTAAATTGTTGCATGGTCCATCTCGAAGTCTTGCAAGACCTCAGTAG 1770 0.4525 MGLCTSKPHSPPNSKPHSPSNHTEPDTTSTTKPHSNGQNPTPHTPTHLKTGKKSPLFPFYSPSPAHHLFSGKSPAAGTPRRFFRPPSPAKHIRAVLARRHGSVKPNEVAIPEGSEAEVAVALDKSFGFSKHFGHKFQLGDEVGRGHFGYTCAAKFIKGDLKGHQVAVKIIPKSKMTTAIAIEDVRREVKILRALTGHKNLIQFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYTEEDARTVMTQILNVVAFCHLQGVVHRDLKPENFLFTSKDENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSSEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEPPWPSLSDEAKDFVKRLLNKDPRKRMTAAQALGHPWIKNYKDVKVPLDIIVLKLMRVYMRSSSLRKAALRALSKTLAIDELNYLREQFAVLEPNKNGTISLDNIKAALMKNATDAMKESRITDFLASLNALQYRRMDFDEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIMIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLARPQ* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3318 589 MobiDBLite consensus disorder prediction 1 57 - -
Lja4g3318 589 CDD STKc_CAMK 135 397 - -
Lja4g3318 589 Gene3D Phosphorylase Kinase; domain 1 129 225 - -
Lja4g3318 589 SUPERFAMILY EF-hand 426 580 IPR011992 -
Lja4g3318 589 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 40 584 - -
Lja4g3318 589 Gene3D - 415 507 - -
Lja4g3318 589 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 584 - -
Lja4g3318 589 ProSitePatterns Protein kinases ATP-binding region signature. 142 168 IPR017441 GO:0005524
Lja4g3318 589 Gene3D - 423 577 - -
Lja4g3318 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Lja4g3318 589 SMART serkin_6 136 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3318 589 Gene3D Transferase(Phosphotransferase) domain 1 226 413 - -
Lja4g3318 589 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Lja4g3318 589 Pfam Protein kinase domain 137 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3318 589 MobiDBLite consensus disorder prediction 7 48 - -
Lja4g3318 589 SUPERFAMILY Protein kinase-like (PK-like) 134 431 IPR011009 -
Lja4g3318 589 ProSiteProfiles Protein kinase domain profile. 136 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3318 Lja-Chr4 62654387 62659328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3318 1 582 EF-hand Containing Proteins AT3G50530 75.478 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja4g3318 Pkinase 1.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3318 K00924 - gmx:100803313 990.334