Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3313 ATGCGTTGGTTACTTTCCCTTTTGTTTTCTAACAGCTCTTCCTCCGCCGCCTCCGTCGACCACCACCGCCGGAAGGCCTCCGCCTTTAAAAAGGACAGGTGCTGCTCCGCCGAGGAGCCTCGCCCGCTCCCCTTGCCGGAGCTTTCCTCCTCCCTGCTTCTCGTCAGAGACGCTGACTTCCCTCTCCCCTCCCCCAAGGATGCTCCTCCCTCCACCGCCGCCCCCGTCTTTCGGATGCGAAGTGTTTTTGCTAGCCAAGAGAAAAGGAAGAGTATGGAGCAAGGTGAAAATAGGCCAACAAGGAAGGTGCATCAAGATGTGAGTAGTAGTGAGGACACTAGAGATAATAACAATAATAATAATAACCAGAACTTGGTCAAAGTACCTGGAAGGAGTGTTTCCACCTTAACTAGCCCATTTGCAAGTCCCTTAATCAGCAGCCCACAGAGGAGAAGTACTAGTGATTTTGTACCATATTATTATGTGACTCCAAGAGGGAATCAATTCTGGTCTGCACCAGAGATGCCAACAACTGAATCAGGGATGACGCCGCCTCCTGCTTTCTTTGATTTATCAGCATTAGGCACTGCTGAAGCCTCTCCCTCTCCCCAGCAGAGTCCACAGGGAAGAAGTCCACAGAGAAACCCTAGAAGTGGACCTCCATCACCTGTACATCCCATGATGTCTCCTGAGATCTCAGGGCCGCGTTTCGAAAGTAATGTTCCGGTCGGGGTTCACCCCTTGCCCTTGCCTCCTGGGGCAGCCTTGTCTTCACCATCAGCTGCTGCTGCAGCTACCTTCTCCCATGCTGGGGCTAATAGGTCTGAAGCATTGCCAATGAATTACCAATGGCAAAAAGGGAAACTTATTGGGCGCGGCACGTTTGGAAGTGTTTATGTTGCCACCAATAGGGGGACTGGAGCATTATGTGCAATGAAGGAAGTAGAAATATGTCCTGATGATCCAAAATCTGCAGAGTGTATGAAGCAATTAGAGCAGGAAATTAAAGTTCTTAGCCAGCTGAAACATCCAAACATTGTGCAGTATTATGGCAGTGAAATAGTTGAAGACCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCACTTAATAAATATGTCCGTGAACATTGTGGTGCTGTAACAGAGTGTGTCCTTCGGAATTTCACTCGCCATATCCTTTCGGGGTTGGCTTATTTACATAGCAAAAAAACAATTCATAGGGACATCAAAGGGGCTAATTTGCTAGTTGATTCTGCCGGAGTTGTTAAACTTGCTGATTTTGGGATGGCTAAGCATCTAACTGGATGTGAAGCTATTCTTTCTTTGAGGGGAAGTCCGTACTGGATGGCTCCAGAGCTTATGCAGGCTGTGATACAGAAGGATAACAGTGCTGACCTAGCCTTTGCAATTGATATTTGGAGCTTGGGTTGTACAATCATTGAAATGTTCACAGGGAAGCCTCCTTGGAGTGAATATGAAGGGGCTGCAGCTATGTTTAAGGTCATGAGGGATACCCCTCCTATACCTGAAACATTGTCATTAGAGGGTAAAGATTTCCTGAGATGCTGCTTTAAAAGAAATCCTGCGGAGCGGCCACCTGCTGCAGTGTTACTAGAACATCGGTTTTTGAAAATCTCACATCAGCCAGATCTTTCATCTCCCACCCAGCTGTATAATGGAACAAGCTTCATGGATAAACCACAACATAGTCCTAGAGGGCAATCCGAAAACAAAGCCTATCAGATGTCTACTCCGAGTACAAAGATTGCAAATGGGAAAGTTGCTGTGAGATGTGGATTCCTCGTTCCTTCCATAGATATTCTCCCTGCACAGTGGCGGAGCCAAGAATTTTGTGGAGCCTGGGCAAGTTTGTACACCAATGAAAACAGAGATTTTATTGATTGA 1911 0.4683 MRWLLSLLFSNSSSSAASVDHHRRKASAFKKDRCCSAEEPRPLPLPELSSSLLLVRDADFPLPSPKDAPPSTAAPVFRMRSVFASQEKRKSMEQGENRPTRKVHQDVSSSEDTRDNNNNNNNQNLVKVPGRSVSTLTSPFASPLISSPQRRSTSDFVPYYYVTPRGNQFWSAPEMPTTESGMTPPPAFFDLSALGTAEASPSPQQSPQGRSPQRNPRSGPPSPVHPMMSPEISGPRFESNVPVGVHPLPLPPGAALSSPSAAAAATFSHAGANRSEALPMNYQWQKGKLIGRGTFGSVYVATNRGTGALCAMKEVEICPDDPKSAECMKQLEQEIKVLSQLKHPNIVQYYGSEIVEDRFYIYLEYVHPGSLNKYVREHCGAVTECVLRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGCEAILSLRGSPYWMAPELMQAVIQKDNSADLAFAIDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDTPPIPETLSLEGKDFLRCCFKRNPAERPPAAVLLEHRFLKISHQPDLSSPTQLYNGTSFMDKPQHSPRGQSENKAYQMSTPSTKIANGKVAVRCGFLVPSIDILPAQWRSQEFCGAWASLYTNENRDFID* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3313 636 MobiDBLite consensus disorder prediction 112 131 - -
Lja4g3313 636 MobiDBLite consensus disorder prediction 18 38 - -
Lja4g3313 636 SUPERFAMILY Protein kinase-like (PK-like) 281 576 IPR011009 -
Lja4g3313 636 MobiDBLite consensus disorder prediction 197 213 - -
Lja4g3313 636 MobiDBLite consensus disorder prediction 85 131 - -
Lja4g3313 636 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 24 593 - -
Lja4g3313 636 MobiDBLite consensus disorder prediction 85 111 - -
Lja4g3313 636 SMART serkin_6 284 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3313 636 MobiDBLite consensus disorder prediction 16 44 - -
Lja4g3313 636 ProSiteProfiles Protein kinase domain profile. 284 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3313 636 MobiDBLite consensus disorder prediction 214 228 - -
Lja4g3313 636 Gene3D Transferase(Phosphotransferase) domain 1 281 583 - -
Lja4g3313 636 MobiDBLite consensus disorder prediction 197 244 - -
Lja4g3313 636 ProSitePatterns Protein kinases ATP-binding region signature. 290 313 IPR017441 GO:0005524
Lja4g3313 636 MobiDBLite consensus disorder prediction 562 581 - -
Lja4g3313 636 Pfam Protein kinase domain 285 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3313 636 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 24 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3313 Lja-Chr4 62589730 62594378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3313 91 567 MAP Kinase Kinase Kinase AT5G66850 61.277 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja4g3313 Pkinase 1.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3313 - - gmx:100790701 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3313 4 62589730 62594378 Lja4g3313 4 62589730 62594378 ECH
Lja2g0362 2 3342217 3346565 Lja4g3313 4 62589730 62594378 PCT