Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3311 ATGTCATCGTCGTCGAATTCAACATGCGCGGCGTGCAGGTGCATTCGGCGGAAGTGCACGGAGGATTGCTTCTTGGCTCCATATTTCCCGGCGGACAAACCGCAACGGTTTGCGTGCGTGCACCGCGTGTTCGGCAAGAGCAACATAGATAAGCTACTGAAAGAGCTTCCAGAGTCGCAGCGCTATGGCGCGGTGGATTCGCTCGTGTACGAGTCGGAATCTCGCCTGAGGGACCCTGTTTACGGCTGCGTCGGGTTAATCTCGGTGATGCAGAAGAGGCTCCGCGAGATGAATGCTGAAATCGCCGACGCCAAGAAGGAGCTCGGGAATTACCTCGGCCCGGAGGAGTTGAAGTACGTGCTTGCTAACCCCGGTGGTGAGATACCCCTCAACGCCGCGCATGATCTTCTACCGTTTCCTGCCAGTAACATGGTGGTGCCGGTGGGGATTCCGGTTCCTATTGAGCAGCAGTTACTGGAGGCGCAGCGGGTGGCGGATGAGCGGGAGGTTAGAGATGGGCAACTCCCCCGCGGCAGGCAGATGGGGATTCTGGATCCTATGGAGCAGGAGTTGTTTGAGGCGCAGCAGCTGGCGGATGCGCGGCAGGTGGTTATGAGCGGGCAGGGAGGTAGGCAGGTGGTGGCGAAGGATTCTCAACTGGAAGAGTTATTTGAGGCGCAGCAGATGGCGTGGGCGATGGCGGATATACGTCGGCCGTGCCGCGGGTTGGTGATTCGGGAGCAACAGGAGCGGGAGCTTCTGGAGGCGCAGCAGCTGGCGGTGGCGCAGCAGGTTGGTATGAATATGAGCGGGCACGGACGTGGCAAGCAGGTGATGGCTCAGGATCCTCTGGAGCCGGAGTTATTGGCGGCGTATGAGCTGGCGGCGCAGCTGACGGGTATGGGCGGGCAGGGTGGAGGGCAGGTGATGGCTCAGGATCCTCAGGAGCAGGAGTTACTGGAGGTGCAGCAACAGGTGGTTATGGGCGGGGAGGGCGGCAGGCCGCGGCCTCAGGGGCGGGACTATTGGGAGGTTCAGCAGCAGATGGCGGCGCAAGGGGCGATTATGGGTGAGCACGAGGGGAGACAGGTGATGTTTCTGGATGCTCAGGAGAAGGAGTATCTAGAGGCTCAGCTGCTGAAACAGGCGATAGAAGAGAGTCGGCAGCTGGAGCTGGAGCTTCAGCTTCAGCAGCAAGCTATGCTTTGGAACTATGGGGAGCAGGCAGTTGGTGCTGGCAGTAGTGGTGGTGGAGGGTTGGGTCAGGAGATTGAGGTTACTGTTCATGGTGGTGGTGGTGGCGGTTTTCATCGGGGTGAGGCTTCTGGTTCCCACCAGGCTCTGTTTGATAATGTTGGTAGTAATCAGATGCAGCAGCAGCCACCACAGCAAGGTTGGGTTTACCATAATCAGGACCACCATGTTCCTCACCAACCTCCGATTGAGGCACAGCAAGAGCAAGGCAGTAATCAGATGCAGCAGCAGCAGCCACAGGCACAACAAGGTTGGGTTTCCCTTAATCAGCACCACCATGTTCCTCACCACCCTCCGATTGAGGCGGCACAGCAAGAGCAAGGCAGTAATCAGATGCAGCAGCAGCAGCCACAGGCACAGCAAGGTTGGGTTTCCCTTAATCAGCACCACCATGTTCCTCACCACCCTCCGATTGAGGCGGCACAGCAAGAGCAAGGCAGTAATCAGATGCAGCAGCAGCAGCCACAGGCACAGCAAGGTTGGGTTTCCCTTAATCAGCACCACCATGTTCCTCACCACCCTCCGATTGAGGCGGCACAGCAAGAGCAAGGCAGTAATCAGATGCAGCAGCAGCAGCCACAGGCACAGCAAGGTTGGGTTTCCCTTAATCAGCACCACCATGTTCCTCACCACCCTCCGATTGAGGCGGCACAGCAAGAGCAAGGCAGTAATCAGATGCAGCAGCAGCAGCCACAGGCACAACAAGGTTGGGTTTCCCTTAATCAGCACCACCATGTTCCTCACCACCCACCGATTGAGGCACAGCAAGAGCAAGGCAGTTATCAGATGCAACAGCAGCAGCCACAACAAGGTGAGGAATACCATCATCAGGACCATCATTCTCCTGATAACAACTCTCCGGTTGAGTCACAGCAAGGTAGTAATGAGATAGAGCAGGATCCACAGCAAGGAAGTAATCAGATGGAGCTGGAGCCACAGGAAGGAAGTAATCAGATGGAGCTGGAGCCACAGGAAGGTGGGGGGGAGTACCATCATCAGCAGCAGCAAACACAGCAGCCGATGTTTGCGGGTCTTGGAGCGGGTAGGAGCGTCGGTCCTTGTTGTTGA 2322 0.5732 MSSSSNSTCAACRCIRRKCTEDCFLAPYFPADKPQRFACVHRVFGKSNIDKLLKELPESQRYGAVDSLVYESESRLRDPVYGCVGLISVMQKRLREMNAEIADAKKELGNYLGPEELKYVLANPGGEIPLNAAHDLLPFPASNMVVPVGIPVPIEQQLLEAQRVADEREVRDGQLPRGRQMGILDPMEQELFEAQQLADARQVVMSGQGGRQVVAKDSQLEELFEAQQMAWAMADIRRPCRGLVIREQQERELLEAQQLAVAQQVGMNMSGHGRGKQVMAQDPLEPELLAAYELAAQLTGMGGQGGGQVMAQDPQEQELLEVQQQVVMGGEGGRPRPQGRDYWEVQQQMAAQGAIMGEHEGRQVMFLDAQEKEYLEAQLLKQAIEESRQLELELQLQQQAMLWNYGEQAVGAGSSGGGGLGQEIEVTVHGGGGGGFHRGEASGSHQALFDNVGSNQMQQQPPQQGWVYHNQDHHVPHQPPIEAQQEQGSNQMQQQQPQAQQGWVSLNQHHHVPHHPPIEAAQQEQGSNQMQQQQPQAQQGWVSLNQHHHVPHHPPIEAAQQEQGSNQMQQQQPQAQQGWVSLNQHHHVPHHPPIEAAQQEQGSNQMQQQQPQAQQGWVSLNQHHHVPHHPPIEAAQQEQGSNQMQQQQPQAQQGWVSLNQHHHVPHHPPIEAQQEQGSYQMQQQQPQQGEEYHHQDHHSPDNNSPVESQQGSNEIEQDPQQGSNQMELEPQEGSNQMELEPQEGGGEYHHQQQQTQQPMFAGLGAGRSVGPCC* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3311 773 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 262 - -
Lja4g3311 773 MobiDBLite consensus disorder prediction 559 580 - -
Lja4g3311 773 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Lja4g3311 773 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 1 262 - -
Lja4g3311 773 MobiDBLite consensus disorder prediction 414 442 - -
Lja4g3311 773 Pfam Lateral organ boundaries (LOB) domain 9 105 IPR004883 -
Lja4g3311 773 MobiDBLite consensus disorder prediction 521 542 - -
Lja4g3311 773 Coils Coil 367 400 - -
Lja4g3311 773 MobiDBLite consensus disorder prediction 482 504 - -
Lja4g3311 773 MobiDBLite consensus disorder prediction 597 618 - -
Lja4g3311 773 Coils Coil 87 107 - -
Lja4g3311 773 MobiDBLite consensus disorder prediction 702 738 - -
Lja4g3311 773 MobiDBLite consensus disorder prediction 635 773 - -
Lja4g3311 773 MobiDBLite consensus disorder prediction 747 761 - -
Lja4g3311 773 MobiDBLite consensus disorder prediction 673 689 - -
Lja4g3311 773 MobiDBLite consensus disorder prediction 635 659 - -
Lja4g3311 773 MobiDBLite consensus disorder prediction 454 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3311 Lja-Chr4 62552841 62555162 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3311 3 121 AS2 family AT5G66870 59.664 5.41e-47 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja4g3311 LOB 2.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3311 - - lja:Lj0g3v0229429.1 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0363 2 3356113 3358818 Lja4g3311 4 62552841 62555162 PCT