Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3310 ATGTCATCATCGAACACCCCGTGCGCGGCGTGCAAGTTCCTGCGGCGGAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCAGAGAACCCGCAACGGTTTTCAAGCGTGCACCGCGTGTTTGGCGCGAGCAACGTGGCGAAGCTCCTGAACGAGCTTCAAGCCTCGCAGCGCGATGACGCGGTGAAGTCGCTCGCGTATGAGGCGGATGCGCGCTTGAGGGACCCAGTGTATGGCTGTGTCGGCTTTATCTCGGTCCTTCAGCAGCGCCTCCGCCAGATGCAGGCCGAAGTGGCCATTGCCAAGAAGGAGCTTGGGACTTACGTTGGTCCCCAGGGGATTAACTACCTCCTCGCCAACCCCGGCCCCGTCATCCTCCCCAACCAACAAGGCGGCGGCATGGGTGGGAACACCAACCAAAACGCTGCGTTTGACCTTCTCGCGAACTTTCCTCCCAATAACATGGGGCCGGCCGGGCAGGGGGTTATGGCCGGGCACGGAGGCGGACAGGTGGTGATTCGAGACCCGCAGGAGCAGGAGTTTCTGGAGGCGCAGCAGCTGGCGGCCGCGGCGGCTCAGCAACAGCAGCAGCAGGCTATGCTTAGGAGCTATGAGCAGCAGCAGCAGGAGATGATGAGATACAACAGTGGCGGGTTTGAGGCGGTTGGTGTTGGTGGTGGCGGTGGGTATGGTCACCAGATGGGTGTTGCTATTCCTGGTGGTGGTGGTGAGGTTTCTAATTCCCTGGCTCTGTTTGATAATGTTGGCAGTTATCAGATGCAGCAGCAGCCACAGCAAGGGGGTGAATATCATCAGCACCACCATGTTTCTCACCAGCCTCCGGTTGAGGCACAGCTTCTGCTCTCGCCGCAGCAATCACAGCAGCAATCAGATCTTGAGGAGGTTAGGAGCGTTGGCCCTTGCTGA 933 0.5991 MSSSNTPCAACKFLRRKCTQECVFAPYFPPENPQRFSSVHRVFGASNVAKLLNELQASQRDDAVKSLAYEADARLRDPVYGCVGFISVLQQRLRQMQAEVAIAKKELGTYVGPQGINYLLANPGPVILPNQQGGGMGGNTNQNAAFDLLANFPPNNMGPAGQGVMAGHGGGQVVIRDPQEQEFLEAQQLAAAAAQQQQQQAMLRSYEQQQQEMMRYNSGGFEAVGVGGGGGYGHQMGVAIPGGGGEVSNSLALFDNVGSYQMQQQPQQGGEYHQHHHVSHQPPVEAQLLLSPQQSQQQSDLEEVRSVGPC* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3310 310 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lja4g3310 310 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lja4g3310 310 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 283 - -
Lja4g3310 310 MobiDBLite consensus disorder prediction 262 310 - -
Lja4g3310 310 Coils Coil 86 106 - -
Lja4g3310 310 Coils Coil 189 209 - -
Lja4g3310 310 MobiDBLite consensus disorder prediction 286 303 - -
Lja4g3310 310 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 1 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3310 Lja-Chr4 62503624 62504556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3310 1 228 AS2 family AT5G66870 44.758 3.10e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja4g3310 LOB 2.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3310 - - gmx:100816778 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3310 4 62503624 62504556 Lja2g0363 2 3356113 3358818 PCT