Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3309 ATGAAAACTAATTCTAGAGGAAATGGGTCCTTTACTATTTTGAAGGAAACTATTGACATGAAGAACTGGATGAGCTCTGCTCAGCTATGGAGCGCTGAAACTAAATCGAGGAGTGGAGAGGATCATCGATTTGTGCCCCACAACCCGATTCAACCATGGATCGAGACCAGCAACAGTGAAGGAGCATTTGCGGCATTCAATGGAAACTCTTGTGTCACAAAGACTGCCTTAAGGGATGACAAGGAGATTTCAAAGGTTCCTAGCCTTGGTTTGATGGCTCAAGCTTTTGAGCTGCATCATGGAAACTCCACAAGCCAGGGCCAACAACAACAGCGGCAGAATCCCAGGAAACAAAGGAGATGTTGGTCGCCGGAGCTTCATCGGCTTTTCGTTGATGCCCTTCAACAATTGGGAGGACCACAAGTTGCCACTCCTAAGCAGATTAGAGAACAGATGCAAGTGGGAGGCCTGACAAATGATGAAGTGAAAAGTCACTTGCAAAAGTACAGGCTTCATTTTAGAAGAATTTCAACTTCAGAAGATCAATGTGGAGATAATAACAAATTTTCAAAGGGAAACTTATCACAATCTGGATCCCCACAAGGTCCTCTCTATCTTGGAGGGTCTGTTAATGTCCTTTCAAACAGTGTGGACACAGAAGAAGATGATGAGCAATCAGATTGCCACAGTTGGAAAGGTGGGATTCACCAGCAACCACAATTGCTGGTGTAG 732 0.4467 MKTNSRGNGSFTILKETIDMKNWMSSAQLWSAETKSRSGEDHRFVPHNPIQPWIETSNSEGAFAAFNGNSCVTKTALRDDKEISKVPSLGLMAQAFELHHGNSTSQGQQQQRQNPRKQRRCWSPELHRLFVDALQQLGGPQVATPKQIREQMQVGGLTNDEVKSHLQKYRLHFRRISTSEDQCGDNNKFSKGNLSQSGSPQGPLYLGGSVNVLSNSVDTEEDDEQSDCHSWKGGIHQQPQLLV* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3309 243 MobiDBLite consensus disorder prediction 182 205 - -
Lja4g3309 243 SUPERFAMILY Homeodomain-like 115 175 IPR009057 -
Lja4g3309 243 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 235 - -
Lja4g3309 243 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 117 172 IPR006447 GO:0003677
Lja4g3309 243 MobiDBLite consensus disorder prediction 180 205 - -
Lja4g3309 243 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 235 IPR044787 GO:0003700|GO:0006355
Lja4g3309 243 Gene3D - 116 174 - -
Lja4g3309 243 Pfam Myb-like DNA-binding domain 119 170 IPR001005 -
Lja4g3309 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 174 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3309 Lja-Chr4 62436989 62439177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3309 4 184 G2-like Transcription Factor Family AT2G03500 38.009 4.34e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja4g3309 Myb_DNA-binding 5.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3309 - - lja:Lj0g3v0129219.1 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3309 4 62436989 62439177 Lja2g0367 2 3379224 3381179 PCT