Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3279 ATGTTTCATCACCAAACAAAGCTTGCTATTCTCCTCACAATCTTCATCTTCTGCTCAGCAAAATCCCAAAGCAACAACCAAAACTGCAACCGCAGGTGTGGAGAATCTTCCCTTCACTACCCTTTCGGCTTCTCCGATGGCTGTGAAGTCAAGCTAAACTGCACTGAAAACAGAGTCAAGATCAGCGAGTTGCAGGTCCAGAACGTAACCTCCGATAGCATATTCATCACCCTGCCGGCAAAATGCAACCGGAGCATGAGTTTCATTGATCCACTTTTCAGCAACAATTTCGCTCCAACATGGAACAACAGCTTCCTGGTGCAGACTTGTGTGGACAAACTCGGTGGCTGCGTTATTCCGACCTCGAGTTTCATTGGAGGGAAGGTGGAGGTGGAAGGGTGTGAGGGAAAGAGTGATGATATCGGTTGCTTCACGCAGTTGCAGCGTGAGCGTCGGCGTGAGCGTGAGGATGTTATCAGGATTGAGGAATGGAAGGGGATTCAGTGCAGGTTCTTGTTTTCTGCTATTGCTGTTGGTAGTAAGAGTGAGGTGAAAGAGATTTCACTTCAATTTCAGGTGGTTGAGTTGGGGTGGTGGCTTGATGGGGCTTGTAATTGCTCCGGTAACGCAACCTGTACCGAGGTCCATCTTGCAGGACATAAACAAGGTTTCCGGTGCCGGTGTCGCGAAGGCTTCGTCGGAGATGGGTTCACTAACGGAACTGGCTGCCGGAGATTAGTTTCTCAATGCAATGCTTCAACGCTGGGGTCTGGTGGATGTGGAAAAGCAATCAGAGTTGGTGTCCTTGTTGGAGGGATCACCGTTGGAGCATCCGTGGTGGCTGCTCTGTCCCTTCTATGTTACTTTTCCAGACGCCGTTCCTCATGGCTGACAAAACAATTGACGGTCAAGCGCCTGTTAAGAGAAGCTGCGGGGAGCTCTATTGTTCCTCTGTACCCCTACAAAGAAATAGAAAGAGCCACAAATTTTTTCTCTGAGAAACATAGGCTCGGAACTGGGGCTTATGGAACAGTGTATGCAGGAAACCTTCACAATGATGAGTGGGTGGCTATAAAAAAGATCAAGTATAGAGACACCAACAGTGTTGACCAAATCATGAATGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCGAATTTAGTACGCCTCCTAGGTTGCTGCATAGAAAAGGGAGAGCATATTCTTGTTTATGAGTACATGCCCAACGGAACGCTATCTCAACATTTGCAGAGAGAAAGGGGTGGGGTACTTCCATGGACAGTAAGACTCACCATTGCTACTGAAACAGCTAATGCTATAGCATATCTCCATTCTGCAAATGATACTCCAATTTATCACAGAGACATAAAATCAAGTAATATTCTCTTGGACTTCAACTTTCAATCAAAAGTAGCAGATTTTGGGCTTTCAAGGCTTGGCATGACAGAAACATCACATATCTCAACTTGCCCACAAGGGACTCCGGGCTATGTAGATCCGCAATACCACCAGAACTTTCACCTTTCTGATAAAAGTGATGTCTACAGTTTTGGAGTAGTTTTGATAGAGATAATCACAGCCATGAAAGTGGTTGATTTTTCTAGACCTCCGAGTGAGATCAATTTGGCTGCACTTGCTGTTGATAGGATTAGGAGGGGCTGTGTAGATGACCTCATAGATCCTTTCCTTGAACCACATAGGGATGCTTGGACCCTCTATTCGATCCACAAGGTGGCTGAGCTAGCGTTTAGATGTCTTGCTTTTCATAGTGACATGAGGCCTACTATGATTGAAGTAGCGGAGGAGCTAGAACACATCAGACGAAGCGGGTGGGCAACTATGGAGGAAACTATATGCACAGCCTCGTCGGTCGGTTCTGCGTGTTCATCACCTCGTAATGGAACCGAGAATTTACCAAGTGGAAATTGTTTTGAGATAGAAGGACATAAGAGTGAGATATTGATTGTTCCACAGATGACTGATAATTTTTTGCAATCAATGAAAGAGGTAAAGGACAGCTCCCCTGTATCTGTGCCTGATACTTGGTCAAGTGGACCGAGCTCACCATCAACAAACAGCTTGTTAGGAAACTTAGTTCGGTGA 2103 0.4603 MFHHQTKLAILLTIFIFCSAKSQSNNQNCNRRCGESSLHYPFGFSDGCEVKLNCTENRVKISELQVQNVTSDSIFITLPAKCNRSMSFIDPLFSNNFAPTWNNSFLVQTCVDKLGGCVIPTSSFIGGKVEVEGCEGKSDDIGCFTQLQRERRREREDVIRIEEWKGIQCRFLFSAIAVGSKSEVKEISLQFQVVELGWWLDGACNCSGNATCTEVHLAGHKQGFRCRCREGFVGDGFTNGTGCRRLVSQCNASTLGSGGCGKAIRVGVLVGGITVGASVVAALSLLCYFSRRRSSWLTKQLTVKRLLREAAGSSIVPLYPYKEIERATNFFSEKHRLGTGAYGTVYAGNLHNDEWVAIKKIKYRDTNSVDQIMNEIKLLSSVSHPNLVRLLGCCIEKGEHILVYEYMPNGTLSQHLQRERGGVLPWTVRLTIATETANAIAYLHSANDTPIYHRDIKSSNILLDFNFQSKVADFGLSRLGMTETSHISTCPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLIEIITAMKVVDFSRPPSEINLAALAVDRIRRGCVDDLIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPTMIEVAEELEHIRRSGWATMEETICTASSVGSACSSPRNGTENLPSGNCFEIEGHKSEILIVPQMTDNFLQSMKEVKDSSPVSVPDTWSSGPSSPSTNSLLGNLVR* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3279 700 Pfam Protein tyrosine and serine/threonine kinase 334 602 IPR001245 GO:0004672|GO:0006468
Lja4g3279 700 SUPERFAMILY Protein kinase-like (PK-like) 312 604 IPR011009 -
Lja4g3279 700 MobiDBLite consensus disorder prediction 674 700 - -
Lja4g3279 700 Gene3D Laminin 198 241 - -
Lja4g3279 700 Gene3D Transferase(Phosphotransferase) domain 1 407 623 - -
Lja4g3279 700 CDD STKc_IRAK 337 606 - -
Lja4g3279 700 SMART serkin_6 331 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3279 700 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Lja4g3279 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Lja4g3279 700 ProSiteProfiles Protein kinase domain profile. 331 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3279 700 Gene3D Phosphorylase Kinase; domain 1 292 406 - -
Lja4g3279 700 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 11 680 - -
Lja4g3279 700 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 11 680 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3279 Lja-Chr4 61864172 61867873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3279 1 700 Receptor kinase-like Gene Family AT2G23450 53.607 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lja4g3279 PK_Tyr_Ser-Thr 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3279 - - lja:Lj4g3v0867570.1 1357.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0383 2 3488217 3492870 Lja4g3279 4 61864172 61867873 PCT