Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3259 ATGGAAAAAGTACTTCCTTGTTCTGATACTCAGCGTGCTGTGGAATCCGATCGCTCTCAGCTGAATTTAGGAACAAGTTATCTGTACCAGGAAGAACCTATTAATTGCGTTGAAAATCGCGAAGATGATATGTTTGAATACGGCGGTCAACTTAACGACTCATTACTGAAGAAGACAGAAGGACGGGGACCTACTGTTAGTGAAATCTTGGCCAATTCTTATTGCCAAAACGCCGGAGCTTTAGTTTTTGACTCTCAAGTGGAAAACCAAGAGAAACCTTGTAGTTTGCATGCCATTGCAGATAATGACATAAATGAGCCTCGCTTAACCTCTGAGAACTCTCTCTCTATGGTAGATTTGATTGAAAATGAATCGCCAAACACCGGTAGGGAAGGTGCATTGTCATTTTCTGAACCCGCTTGGCTAGAGGGGGAAGAAGAGACGATGGCATTATGGGTAAAGTGGAGAGGGACATGGCTGGCCGGCATAAAATGTGTGAGGGCTGACTGTCCATTATTAACATTGAAAGCAAAACCAACTCATGAACAGAAGAATTATTTTGTCATCTTTTTCCCTCACACAAAGAAATACTCTTGGGCTGACATGCTGCTTGTTCGACCGATCGATGAGTTTCCGCAGCCGACCGCATACGAAACTCATCAGGAAGCACTGGAAATCGTAAAAGACTTGACTGTTGTGCGACGGTTCACAATGCAAGATCTAGCCCTCAGCATATTGTACACTCTTGATCAGCTTCATTCCCATGCTTTAGTAGAAACTGCTTGTGATGTGATGGTCTGGAAGGAACTTGCTATGGAGGCTTCTCGTTGTAACGCTTATTCGGATTTGGGGAGAATGCTTCTCAAGCTACAAAATAGCATAGCGCCGCGGTACATAAGTGCTGACTGGATCAATTCTTCGTTTGACTCTTGGGCGGAACGATGCCGGAATGTAAATAGTGCTGAATCAGTAGGGCTGCTGAAGGAGGAATGGGTTAATTCTATTCTCTGGAATGATGTAAACAGTCTCTCGAGTGTGCCTGTGCAACCAACACTTGGTTCTGAGTGGAAAACCTGGAAGCAGGATGTTATGAATTGGTTTTCAACGCCTTATAGCGGGTACCAAGTAAGCCTTCAGATTGGTAGAGAAAGGCGCAAACTCCAAGTTCATCGTGCTGATACAGACACTTCACTGGCAGGAACCAAGGGTTCAGATCACTCTATTACTCTTGAGACTAGCCCAGGTTTCTCTAAGAACCAGAACACAGTGAGTGCATTGGCAATTGTACCTTTTGAACAGGAAAGTTTCAGAGAGGTACACGTCGAAACTGATTTACCTAGTAATTTGACCGATCAGAGGAATGAAATTGTAGTTGAGGGTACAGATTCTGAGATCTTGAATAGCAATGGAATGGAATTAACACCTATTGATGACATGGCTGGTGAGAAAATTATGGAACCTGGAACTAAGAATAAACAATGCATCGCTTATGTTGAAGCCAAGGGTAGGCTGTGTGTGAGATCGCCGAGTGATGGTGATAAATACTGCTGTGTGCATTCTCGGTGTTTAAGCAGCCCGGGAATAACCAAAACGTGTGTAGGTATAACCATTGCTGGTACTAGATGTAAGCATCATTCCCTTCCTGACTCTCCATTCTGTAAGAAACACCGGCCCAGTGCTGAAACCCGCCGCAACCTAAAGAGGAAACATGAAGGAAATTGCACTCCTTCAGAGGGGTTGATCTGCAAAGATATGGTACTATTAAATGATGAAATTCCATTGCAGGTGATTCCGATGTCAGCCAATCGTGGTGATTGCTTCCTCCACAAGTTCCCCGGGAAGCTCGTCCTTTCTGGCAATTGTCATAATGCAATGGAGGAGGCACCTCGCTGTTTAGGCTCTCCTCCGTATGACAATGAGTACCCTTGTGTGCAATCACCTTTGTGGTATTTCTTGTACTGTGAAAAGCACCTTCCAAGCTGGCTCAAACGCGGGAGATATGGTAAGACTAGAGTAATATCGAAGGAAGTGTTCACAGAAATTTTGAGGGACTGCAGCTCATGGGAGCAGAAGGTGCATCTTCATACAGCATGTGGGATTTTTCACAGACTATTCAACGGCATTCTCAGTAACCCGGTGTCTAAGGAATTTCAATTCCAAAGGACTATGACTGAAGCTGCTAAAGATCCTAGTGTTGGAGAATTACTTAAAAGGTTGATAATGAGTGAAAAGGAAAGAATCAAATTGGTTTGGGGATTGGATGATGATATAGATATATCCTCACTCATGGAAGGGCCCTCTCTTGTTCCTACCGCGATTAATGGCAGACTTGATAATGGAGAATTTCTTGATGACCGAACACAAGGTAATCATTGGATGGACAATCATAAAAAGGAAGCACCGCGGCTTTGCAGTAGTTTTGGGTGTGCAATATGCCGGGTTTCTTTTACTGAAAAGAAACTATTGGAAAACCATGTTCAGGAGCGACACCAAGGGGCCAAGCGTTCGGATCACTCTATTACTCTTGCGACTATTCCAGGTTTCTCTAAGAATCAGGACACAGTGGGTGCATTGGAAATTGTGACTCCCGAACTGGAAAATTTGAGAGAGGTACCTGTGGAGACTGATTTACCATGTAATTTGATCGATAAGTGGATTGAAATTGTAGGCCAGGCTGGTGATTCTGAGATCTTGAATAGCAATGGAATGGAAACAACATCTATTGATGCTGGAACCAAGAATCAACAATGTGTAGCATATGAAGTCAAGGGAAGGCAGTCTGTGAGATCGGCTTTGAGAAGCGCAAGAAAAGCCAAAAAACCTGTTCCAATTGAAACTCCAATGTGTGGAGGTACAACCAATGCTGGTAATAGTTGTAAGCATCATTCCCTTCCTGACTCTCTATTCTGTAAGAAACACCTGCCCGGTGCTGAAACCCGTAGTAAACTAAAGGGGAAGCATGAAGCAAGTTGCACTGGTTCAGAGGGCTTGATCTGCAAAGATACTGGCCCATTGCATGTAGATCCGGTTTTAGCCATTGATGGTGGTCGCCATTATAAAACTGCACATATGGGGCACAATAAAATTAGCAGCAAATTGGCAAAAAGAGAAGCTGTATGTTCTGCTCACAGATTGATATCCGGCAGACTTAGCCGCCCGAAGTTTAAAAAATGTTCATCAGCCGCATCATATCGGACCAGAAGTAGGGCTAATGCTAATTTAAAGAGGCATATTCAGGAGACAAAGTCACTTAGGATGAAGGGAAAAAGCGTTCATTTGAATTCAGGGTCCTTGCAAAATGGTATAGTATTATGTGATGACATAAGCTTTGGGCAGGAATCAATTCCAGTGATTTGTGCTGAATATTTTGAAATTCTGAATTCTCAATTCCAACCGCCTTGGGAGAGCTTCACCTATGTTACAAAACCAAGGCTTTATGAATCACTTAGTCTTCATCCTGAGAGTACGCAAATGCAGCGCTCCTGCTCATTTTTTACATTCTGTCCTGAAACATGTCATCAAGCATACCTTTTCGATAACGAATTCGATGATGCGAAAGACGTATTTGGGAAACCGATGCGTGGAAGGTGTCCATATGATGAAAATGGCCGTATAATACTGGAGGAAGGTTACCTTGTGTATGAGTGTAACAATATGAGCAGATGCAATAAAACTTGTGCAAACAGAATTCTGCAGAACGGGATTCGGGTTAAACTGGAAGTCTTTAAAACAGAGAAAAAGGGGTGGGGAGTAAGGGCTGGTGAGGCTATTTTGCGCGGTACATTTATCTGTGAGCTCCTAGGTGAGGTTTTAGATGGGCGCGAGGCGCACGACAGACGCAAAAGATATGGAAAAGAATACTGCAGTTATTTTTATGACATTGATGCTCGCTTTAATGATACGGGTAAAATGATTGAAGGACAAGGCAAGTATGTCATTGATGCTACTAGATATGGGAATGTCTCTAGGTTCATCAATAGCAGCTGCTCACCCAATCTTGTGAGTTACAATGTTTTTGTAGAGAGCTTGGACTGTAAGCGTTCCCATATTGGTCTTTATGCAAGTCGAGACATTGCTTTGGGTGAAGAATTGACATTTGATTATCAGGGCAAGCTTGTTGTTGGAGAAGAAACTCCTTGTCTTTGTGGATCTTCGAATTGCCGAGGACGCCTTCACTAG 4179 0.4331 MEKVLPCSDTQRAVESDRSQLNLGTSYLYQEEPINCVENREDDMFEYGGQLNDSLLKKTEGRGPTVSEILANSYCQNAGALVFDSQVENQEKPCSLHAIADNDINEPRLTSENSLSMVDLIENESPNTGREGALSFSEPAWLEGEEETMALWVKWRGTWLAGIKCVRADCPLLTLKAKPTHEQKNYFVIFFPHTKKYSWADMLLVRPIDEFPQPTAYETHQEALEIVKDLTVVRRFTMQDLALSILYTLDQLHSHALVETACDVMVWKELAMEASRCNAYSDLGRMLLKLQNSIAPRYISADWINSSFDSWAERCRNVNSAESVGLLKEEWVNSILWNDVNSLSSVPVQPTLGSEWKTWKQDVMNWFSTPYSGYQVSLQIGRERRKLQVHRADTDTSLAGTKGSDHSITLETSPGFSKNQNTVSALAIVPFEQESFREVHVETDLPSNLTDQRNEIVVEGTDSEILNSNGMELTPIDDMAGEKIMEPGTKNKQCIAYVEAKGRLCVRSPSDGDKYCCVHSRCLSSPGITKTCVGITIAGTRCKHHSLPDSPFCKKHRPSAETRRNLKRKHEGNCTPSEGLICKDMVLLNDEIPLQVIPMSANRGDCFLHKFPGKLVLSGNCHNAMEEAPRCLGSPPYDNEYPCVQSPLWYFLYCEKHLPSWLKRGRYGKTRVISKEVFTEILRDCSSWEQKVHLHTACGIFHRLFNGILSNPVSKEFQFQRTMTEAAKDPSVGELLKRLIMSEKERIKLVWGLDDDIDISSLMEGPSLVPTAINGRLDNGEFLDDRTQGNHWMDNHKKEAPRLCSSFGCAICRVSFTEKKLLENHVQERHQGAKRSDHSITLATIPGFSKNQDTVGALEIVTPELENLREVPVETDLPCNLIDKWIEIVGQAGDSEILNSNGMETTSIDAGTKNQQCVAYEVKGRQSVRSALRSARKAKKPVPIETPMCGGTTNAGNSCKHHSLPDSLFCKKHLPGAETRSKLKGKHEASCTGSEGLICKDTGPLHVDPVLAIDGGRHYKTAHMGHNKISSKLAKREAVCSAHRLISGRLSRPKFKKCSSAASYRTRSRANANLKRHIQETKSLRMKGKSVHLNSGSLQNGIVLCDDISFGQESIPVICAEYFEILNSQFQPPWESFTYVTKPRLYESLSLHPESTQMQRSCSFFTFCPETCHQAYLFDNEFDDAKDVFGKPMRGRCPYDENGRIILEEGYLVYECNNMSRCNKTCANRILQNGIRVKLEVFKTEKKGWGVRAGEAILRGTFICELLGEVLDGREAHDRRKRYGKEYCSYFYDIDARFNDTGKMIEGQGKYVIDATRYGNVSRFINSSCSPNLVSYNVFVESLDCKRSHIGLYASRDIALGEELTFDYQGKLVVGEETPCLCGSSNCRGRLH* 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3259 1392 ProSiteProfiles Post-SET domain profile. 1376 1392 IPR003616 -
Lja4g3259 1392 ProSiteProfiles SET domain profile. 1237 1369 IPR001214 GO:0005515
Lja4g3259 1392 ProSitePatterns Zinc finger C2H2 type domain signature. 809 830 IPR013087 -
Lja4g3259 1392 SMART PostSET_3 1376 1392 IPR003616 -
Lja4g3259 1392 SMART set_7 1237 1375 IPR001214 GO:0005515
Lja4g3259 1392 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1014 1086 - -
Lja4g3259 1392 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 52 849 - -
Lja4g3259 1392 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1090 1392 - -
Lja4g3259 1392 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 864 1009 - -
Lja4g3259 1392 Pfam Pre-SET motif 1108 1229 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja4g3259 1392 SMART preset_2 1105 1223 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja4g3259 1392 Gene3D SET domain 1082 1374 IPR046341 -
Lja4g3259 1392 Pfam SET domain 1248 1368 IPR001214 GO:0005515
Lja4g3259 1392 SUPERFAMILY SET domain 1098 1382 IPR046341 -
Lja4g3259 1392 ProSiteProfiles Zinc finger C2H2 type domain profile. 807 835 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3259 Lja-Chr4 61383232 61390317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3259 866 975 C2H2 Transcription Factor Family AT2G23740 34.507 1.08e-12 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g3259 Pre-SET 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3259 - - lja:Lj0g3v0309989.1 2855.08