Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3257 ATGGCAATAGCAACACCATCTACTCTCCCTTCCACTCTCTCACAATCAAAGACAAACAATTACCACTCCTTTGATTCGATTTTGGACAAGCAACAAGACTCTTCTGATAATTCTATGTCCCAGGATTACCACCAAGGAATCTTCACCTTCTCCAACGGGTTCGAGAGATCCACCACAGAACACCAACAACACCAACACTCCCAAATTCACAGGGACAAAGTAAGGGTGCAAGACTTCGACCCACAACCACCGCCGCCGCCGCCACTGGTAGCCATAGAAGACGAACCCGGAGGCATCCCTGTGTATGAAACCACGGGGATGCTCTCCGAGATGTTCAATTTCCCCTCCGGCGCTCCGGCCGGAGGTGAATTGTTAGAGCAACAACCACAGCAACAATCAATGACGGTGGCGTTTCGATCCTCCCCACGGCCACAGGCAGTGGGAAGCAGCGACTGGTACGGAAACAATAGACAAGGGATGTTAACCGGGTCGGGACCATTGGAGGATTCAAAGATTCCTCATCATCATCTTCAACATCAGAGCAGTGTGAATAGCCGTGACACTAGCAGCATAGTCCAACATCATAGCAACCAGCACCATCATCATCATATGTCAAACATTAATGCCGATTCAGCAGCTGCCATGCAGCTTTTTCTCATGAATCCCCAAACCAGATCCCCTTCCCCTCCTCCTCCTCATCAACATAATAATAACCAAACTACCCCTTCCACTCTCCACATGTTACTCCCCAACCCTTCCTCCACTTTTGGTTCAGGTGGGTCATTTAGTCAATTTACATGGGTTCCTGGCAGCACTCAAGAACCTGGAGCTAACAACCCAACTGAGAATATTGCAGGTGTTGTGGAAGGACAAGGCCTTTCACTTTCCTTGTCCTCTCACTTAGAAGCAGCCAAAGCTGAGGAATTGAGGATGGGAGATAGTGGTAATTTTCTCTACAATTACAATAATCAAGGTGGTGCTGGTTCTTCTTCTTCTCCTCACTATCCTTATAACAAGAACAATCTTGGGGTTCAACTTCAACACCACAATCACCAGGCATTGCATATGCAAGGGGGGTTTGTGACACCATCTTCATCCTCCTCCTTAGGTGTGGTGAATGTGTTGAGAAATTCAAAGTATGTTAAGGCTGCTCAAGAATTGCTAGAAGAGTTCTGCAGTGTAGGGAGGGGCCAATTCAAGAAGAACAAGTTCACCAGACAGCTATCAAACCCTAGTTCTAATCCCGGTGCTTCTTCATCTTCATCAAAAGATGCTCCTCATTTGTCTCCAGCTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTCCTAACCATGCTTGATGAGGTGGACCGGAGATACAGCCACTACTGTGAGCAAATGCAAATGGTGGTGAACTCATTCGACCTGGTGATGGGTTTTGGGGCCGCGGTCCCTTACACCTCGTTGGCGCAGAAAGCCATGTCACGTCATTTCCGGTGCCTGAAGGACGCGATACTAGCGCAACTGAAGCACAGTTGTGAGCTGTTGGGGGAGAAAGATGGAGCGGGGAGTTCGGGGTTGACGAAGGGCGAGACGCCAAGGCTTAAGATGCTTGAGCAGAGTTTGAGACAGCAGAGAGCGTTCCACCAAATGGGGATGATGGAGCAGGAAGCTTGGAGACCACAGAGAGGGTTGCCTGAACGATCCGTCAACATTTTGAGAGCCTGGCTTTTTGAACACTTTCTTCACCCGTACCCGAGCGATGCAGATAAGCATCTGTTGGCAAGACAGACTGGTCTATCCCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGTTTGTGGAAACCCATGGTGGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAAGGAGCAGCAGAAGCAGAAGCAGCAGCAGAAGAAGAAGAAGAAGAGAGAGAAAGAGAAAGGAATCATCAAAGCAGCAGCAGCAGCAGTGGCCACCACCACCACTTAGTGCAAACTCCAACGCCCTCAGCCACCACGCCACCACCACCAACATTTCAAAGTGAAAACGACCCCTCAGTACTAAATGCAATTAATAGACAAGGCTTCTTGGAAAACCACGAGTACTCCAATGCAACTACCACTACTGTTACGGTGGCGCCACCGGTGTCTGACTCAGATGTGCACCCGGCTAACACCGCTGATGACACGTGTCGACATGGCAGCTTCGGTACAGAAGATTATGGGACCGCTTCTGCTGCTTCTGACAACATTGGTTCAGCTCTTATAAGATTTGGGACCACCACCGTCGGTGATGTTTCTCTCACCTTAGGGCTACGTCACGCCGGGAACGTGCCGCCGGAGAAATCGCCTTTCTCTCTCAGAGACTTTGGAGCCATTTAA 2379 0.4905 MAIATPSTLPSTLSQSKTNNYHSFDSILDKQQDSSDNSMSQDYHQGIFTFSNGFERSTTEHQQHQHSQIHRDKVRVQDFDPQPPPPPPLVAIEDEPGGIPVYETTGMLSEMFNFPSGAPAGGELLEQQPQQQSMTVAFRSSPRPQAVGSSDWYGNNRQGMLTGSGPLEDSKIPHHHLQHQSSVNSRDTSSIVQHHSNQHHHHHMSNINADSAAAMQLFLMNPQTRSPSPPPPHQHNNNQTTPSTLHMLLPNPSSTFGSGGSFSQFTWVPGSTQEPGANNPTENIAGVVEGQGLSLSLSSHLEAAKAEELRMGDSGNFLYNYNNQGGAGSSSSPHYPYNKNNLGVQLQHHNHQALHMQGGFVTPSSSSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFTRQLSNPSSNPGASSSSSKDAPHLSPADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMQMVVNSFDLVMGFGAAVPYTSLAQKAMSRHFRCLKDAILAQLKHSCELLGEKDGAGSSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGAAEAEAAAEEEEEERERERNHQSSSSSSGHHHHLVQTPTPSATTPPPPTFQSENDPSVLNAINRQGFLENHEYSNATTTTVTVAPPVSDSDVHPANTADDTCRHGSFGTEDYGTASAASDNIGSALIRFGTTTVGDVSLTLGLRHAGNVPPEKSPFSLRDFGAI* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3257 792 ProSiteProfiles 'Homeobox' domain profile. 550 613 IPR001356 GO:0003677
Lja4g3257 792 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 90 779 - -
Lja4g3257 792 MobiDBLite consensus disorder prediction 405 435 - -
Lja4g3257 792 SUPERFAMILY Homeodomain-like 555 620 IPR009057 -
Lja4g3257 792 MobiDBLite consensus disorder prediction 710 733 - -
Lja4g3257 792 SMART prehox3 369 501 IPR006563 -
Lja4g3257 792 MobiDBLite consensus disorder prediction 405 426 - -
Lja4g3257 792 MobiDBLite consensus disorder prediction 624 684 - -
Lja4g3257 792 CDD homeodomain 553 614 IPR001356 GO:0003677
Lja4g3257 792 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 90 779 - -
Lja4g3257 792 Pfam Associated with HOX 374 499 IPR006563 -
Lja4g3257 792 MobiDBLite consensus disorder prediction 177 192 - -
Lja4g3257 792 Gene3D - 556 618 - -
Lja4g3257 792 SMART HOX_1 553 617 IPR001356 GO:0003677
Lja4g3257 792 MobiDBLite consensus disorder prediction 221 243 - -
Lja4g3257 792 MobiDBLite consensus disorder prediction 59 78 - -
Lja4g3257 792 MobiDBLite consensus disorder prediction 118 203 - -
Lja4g3257 792 MobiDBLite consensus disorder prediction 125 163 - -
Lja4g3257 792 Coils Coil 619 649 - -
Lja4g3257 792 MobiDBLite consensus disorder prediction 57 83 - -
Lja4g3257 792 Pfam Homeobox KN domain 570 609 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3257 Lja-Chr4 61333647 61342951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3257 369 790 Homeobox Transcription Factor Family AT2G23760 54.545 4.08e-151 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lja4g3257 POX 4.7e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3257 - - gmx:100814959 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3257 4 61333647 61342951 Lja4g3257 4 61333647 61342951 ECH
Lja2g0398 2 3635446 3642757 Lja4g3257 4 61333647 61342951 ECH
Lja2g0398 2 3635446 3642757 Lja4g3257 4 61333647 61342951 PCT