Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3256 ATGGGTTGGTTTACCAAGTTGCTTAAGGGTTCCAACCATAAATCTTCAAGTCGACGATATCATGGATATGAAGATGACAGAGATTCGAATAATGATGATTTGACGGATATTGAGAGAGAAGAAATTGATCGTGCCATCGCACTCTCTCTTTCAGAGGAAGATCATAAAGGGAAAAAAGTTATTGAGGATGATTCTCAATCTGAAGATGATGAAGAACTCTGTCAACTTGATGATGAGGAAGATTGCGATGTTCAAAAAGATGACGAGGACCATCTTGCGAAAAATCAAGAGGACGATGAAGATACATGTCTCACCGAAGTTCAACTTGAGGAAGATGAACAACTTGCTAGGGCAATTCAAGAAAGTTTGAGCATTGGTTCTCCTCCTCGATCCAGCACCGACTCTTTTTTCCAACCTTTTCCACACCTCTTTCCACCTATATACAGAATCTGTGCTGGCTGCAATGCTGAGATTGGCCATGCAAGATTTTTGACTAGCATGGGAGGTGTCTGGCATCCAGAATGTTTCTGTTGCCATGCTTGCAATCTGCCAATCACTGATCATGAGTTTTCGTTGTCAGGAAATCGCCGTTACCATAAATCTTGCTATAAGGAGCTGCATCACCCAAGGTGTGATGTTTGCATGAACTTTATCCCACCAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGACACAAAAATATTGTCCCTCGCATGAACGTGATGGGACTCCTCGATGTTGTAGCTGTCAAAGAATGGAGTCAAGGGACACAAAATATCTATTGCTTGATGATGGTCGCAAGCTGTGCCTAGAGTGTCTAGACTCAGCTATTATGGATACTCATGAATGCCAACCTCTCTATCTTGAACTACAAGATTTCTATGAAGGTTTGAATATGAAAATAGAGCAGCAAGTTCCTATGCTTTTGGTCGAGAGACAAGCACTGAATGAAGCCATGGAAGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTATCAGAAGAGCACACTATCTCCACTATTTTAAGGAGACCAAGGATAGGAGCAGGTTATCAGATCATAGATATGATAACTGAACCTTTTAGGCTGATCCGTCGCAGTGAAGTAACAGCCATACTTGTTTTGTATGGCCTTCCAAGGTTATTGACAGGATTAATCCTGACTCACGAAATGATGCATGCTTGGCTTAGGCTTAAAGGTTATGGCAATCTGAGTCCTGAAGTTGAAGAAGGAATTTGCCAAGTCTTGGCTCATATGTGGCTAGATTCAGAAATATATTCTGTCTCTGGAACTGATCCTGCATCGTCCTCTTCTTCTTCCTCTTCATCATCATCCTCATCATCACCTTCCTCCTTGTCATCATCAAAGAAGGGCAAACGGTCCGACTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAGACAGATAGCTCATCAGCTTATGGAGATGGATTTAGAATGGGTAACCAGGCTGTGCTCAAGTATGGACTTAGAAGGACCCTTGACCATATCCGAATGACTGGAACTTTTCCATAA 1569 0.42 MGWFTKLLKGSNHKSSSRRYHGYEDDRDSNNDDLTDIEREEIDRAIALSLSEEDHKGKKVIEDDSQSEDDEELCQLDDEEDCDVQKDDEDHLAKNQEDDEDTCLTEVQLEEDEQLARAIQESLSIGSPPRSSTDSFFQPFPHLFPPIYRICAGCNAEIGHARFLTSMGGVWHPECFCCHACNLPITDHEFSLSGNRRYHKSCYKELHHPRCDVCMNFIPPNSAGLIEYRAHPFWTQKYCPSHERDGTPRCCSCQRMESRDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLELQDFYEGLNMKIEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEHTISTILRRPRIGAGYQIIDMITEPFRLIRRSEVTAILVLYGLPRLLTGLILTHEMMHAWLRLKGYGNLSPEVEEGICQVLAHMWLDSEIYSVSGTDPASSSSSSSSSSSSSSPSSLSSSKKGKRSDFEKKLGEFFKHQIETDSSSAYGDGFRMGNQAVLKYGLRRTLDHIRMTGTFP* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3256 522 MobiDBLite consensus disorder prediction 48 64 - -
Lja4g3256 522 MobiDBLite consensus disorder prediction 1 35 - -
Lja4g3256 522 Pfam LIM domain 151 205 IPR001781 -
Lja4g3256 522 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 146 176 - -
Lja4g3256 522 MobiDBLite consensus disorder prediction 48 74 - -
Lja4g3256 522 PANTHER PROTEIN DA1-RELATED 2 1 522 IPR045218 -
Lja4g3256 522 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 110 129 IPR003903 -
Lja4g3256 522 ProSiteProfiles LIM domain profile. 149 209 IPR001781 -
Lja4g3256 522 Gene3D Cysteine Rich Protein 148 210 - -
Lja4g3256 522 SMART uim 37 56 IPR003903 -
Lja4g3256 522 SMART uim 110 129 IPR003903 -
Lja4g3256 522 MobiDBLite consensus disorder prediction 441 469 - -
Lja4g3256 522 Pfam Protein DA1 300 518 IPR022087 -
Lja4g3256 522 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 522 - -
Lja4g3256 522 MobiDBLite consensus disorder prediction 441 465 - -
Lja4g3256 522 MobiDBLite consensus disorder prediction 17 35 - -
Lja4g3256 522 SMART lim_4 150 202 IPR001781 -
Lja4g3256 522 CDD LIM_DA1 151 203 - -
Lja4g3256 522 CDD LIM 178 253 - -
Lja4g3256 522 ProSitePatterns LIM zinc-binding domain signature. 151 185 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3256 Lja-Chr4 61291914 61298617 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja4g3256 DA1-like 2.3e-102 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3256 - - gmx:100813890 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3256 4 61291914 61298617 Lja4g3256 4 61291914 61298617 ECH
Lja2g0400 2 3679729 3686319 Lja4g3256 4 61291914 61298617 PCT