Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3255 ATGGACCAGGCCGAATTAACCGTCGATCAGGTTCTCAGTAGGGATATCCCATGGGAGACTTACATGTCCACCAAGCTCATCTCAGGAACTAGCCTTCAGCTCTTACGGCGTTACGATCACCGATCAGAAAGCCACAGAGCACAGTTGCTTGATGATGATGGTCCTGCTTATGTTCGCGTCTTTATTCATGTTTTGCGCGATATTTTCAAAGAAGATACAGTGGAGTATGTTTTGGCACTGATAGATGAAATGCTTACTGCAAACCCGAAGAGAGCAAGACTTTTTCATGACAGCGCTCTTGCAGATGAAGATACTTATGAATTGCTTCGGAAAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTTGCCTTAATAGCTAGTGCCAGGCCAAAAAATCAGAAAGAGATTGCTTCGAATAGAGAAGCATCAAACGAAAAGAAACCATTTACCTCTATTGATGATGTTTTAATAGGATTGGTGAAATGGCTTTGTGAGCAGCTGAAGAAACCTTCTCATCCCACCCGTGGAGTGCCAACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTATCGTTAGGTCTTCCTTCGTCCAAGCAGATGGGGTCAAGTTGCTTGTTCCATTGATTTCTCCAGCATCCACTCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTGTCCTATTTCGAGCCGGCAATTGAATATCTGGCTACTTCAAGGACCCTTCCGAGACTTATTGATGTTGTTAAGAGCACTACAAAAGAGAAGGTTGTTAGAGTTGTTGTCTTGACTCTTAGAAACTTGCTTTCAAAAGGGACGTTGGGTGCTCAGATGGTGGACCTTCAGCTTCCACAAGTTGTTCAGAGTTTAAAAGCACAAGCTTGGAGTGATGAGGACTTGCTTGAGGCGCTGAATTCCCTGGAAGAAGGGCTTAAGGATAACATCAAGAAACTAAGTTCTTTTGATAAGTACAAGCAAGAAGTTCTTCTTGGCAATCTGGATTGGTCTCCCATGCACAAGGATCTCATATTTTGGCGAGAAAATGTCACCAATTTTGAAGAGAATGATTTCCAGATCGTAAGGGTCCTAATAACAATTTTGGACTCGTCCAATGATCCAAGGACTCTGGCTGTTGCATGCTTTGACCTTTCACAGTTTGTCCAGTACCATCCATCTGGGCGGATTATTGTGGCCGACCTCAAAGCCAAGGAACGGGTGATGAAACTTATGAATCATGAGAGTGCTGAGGTTACTAAGAATGCACTGCTCTGCATCCAACGGCTTTTCTTAGGGGCTAAGTATGCAAGCTTCTTGCAGGCTTAG 1347 0.4336 MDQAELTVDQVLSRDIPWETYMSTKLISGTSLQLLRRYDHRSESHRAQLLDDDGPAYVRVFIHVLRDIFKEDTVEYVLALIDEMLTANPKRARLFHDSALADEDTYELLRKGNWFIQEKSCKILALIASARPKNQKEIASNREASNEKKPFTSIDDVLIGLVKWLCEQLKKPSHPTRGVPTAINCLATLLKEPIVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYFEPAIEYLATSRTLPRLIDVVKSTTKEKVVRVVVLTLRNLLSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGNLDWSPMHKDLIFWRENVTNFEENDFQIVRVLITILDSSNDPRTLAVACFDLSQFVQYHPSGRIIVADLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASFLQA* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3255 448 Pfam V-ATPase subunit H 325 437 IPR011987 GO:0000221|GO:1902600
Lja4g3255 448 Pfam V-ATPase subunit H 6 319 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lja4g3255 448 SMART arm_5 398 438 IPR000225 GO:0005515
Lja4g3255 448 SMART arm_5 237 278 IPR000225 GO:0005515
Lja4g3255 448 SMART arm_5 191 236 IPR000225 GO:0005515
Lja4g3255 448 PIRSF V-ATP_synth_H 2 447 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lja4g3255 448 Gene3D - 340 440 IPR038497 -
Lja4g3255 448 SUPERFAMILY ARM repeat 8 438 IPR016024 -
Lja4g3255 448 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 448 - -
Lja4g3255 448 Gene3D - 5 327 IPR011989 -
Lja4g3255 448 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 448 IPR004908 GO:0000221|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3255 Lja-Chr4 61283557 61289412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3255 1 448 Primary Pumps ATPases(2) AT3G42050 77.655 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3255 K02144 - gmx:100788723 781.171