Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3253 ATGACTTCCTTCTTCCTTTTTACAAACACACTATTTCTTGCACTCATGATGTTTTTTTCCACCACCCATCACATCCTTGCTCAATTGTCACATACCAATGGAACAAACTTTTCATGCCCTGTGGACTCACCTCCATCCTGTGACACATATGTAACATACTTTGCTCAGTCTCCAAATTTTTTGACCCTTACAAGCATATCTGATCTATTTGACACCAGCCCTCTTTCAATAGCAAGAGCAAGTAATATAAAGGATGAGAATCAGAACCTTGTTCCAGGCCAACTCTTGCTGGTACCTGTAACTTGTGCTTGCAGTGGAAGCAACTCTTTTTCCAATATCTCACACATGATCAAAGAGGGTGAAAGCTACTACTATCTTTCAACCACTTCATATGAGAATCTCACCAATTGGGAGACAGTGCAAGATTCAAATCCTAATTACAATCCATATCTGTTGCCAGTAGGCATCAAAGTAGTGATCCCTTTGTTCTGCAAGTGCCCTTCAAATTACCACCTGAACAAAGGGATAGAGTATCTGATTACTTATGTGTGGCATAACAATGACAATGTTTCCCTCGTAGCTTCCAAGTTTGGTGTATCAACACAGGACATAATTAGTGAAAACAATTTCAGCCACCAGAACTTCACTGCTGCAACAAACTTTCCAATTTTAATCCCAGTGACTCAGTTACCATCTCTTTCTCAATCTTATTCTTCAAGTGAAAGAAAGAGAAGCAATCATATTCATATTATAATTTCTATTGGTATCAGCCTGGGAAGCACTCTTCTGATTGCACTTTTGGTACTGGTTAGTGTAACTTGTCTGAGGAAGAGAAAGAGTAGTGAAAATAAGAGTTTGTTGTCTGTGGAGATTGCAGGCAAGAAGTTAATTTCTGGAGTTTCAAACTATGTAAGTAAGTCAATCTTGTATGAATTTCGTTTAATTATGGAAGCTACTTTGAACCTCAATGAGCAGTGTAAGATTGGAGAATCAGTGTACAAGGCAAAATTGGATGGTCAAGTTTTAGCTGTGAAGAAAGTAAAGGAAGATGTGACAGAGGAGGTGATGATTCTACAGAAGGTAAATCATTTAAATCTGGTGAAACTAATGGGTGTCTCTTCAGGACATGATGGGAATCACTTCCTTGTGTATGAATTTGCTGAAAATGGGTCTCTTCATAACTGGTTGTTCTCCAATTCTTCAACTGGTTCAAGATTCCTCACATGGAGTCAGAGGATAAGCATAGCAGTTGATGTTGCCATGGGTTTGCAATACATGCATGAACACACTCAGCCAAGTATAGTCCACAGGGACATCACATCAAGTAATATCCTTCTTGACTCCAACTTTAAGGCCAAGATAGCAAATTTTTCTGTTGCCAGAACTTCAATCAATCCCATGATATTAAAAGTAGATGTCTTTGGTTATGGAGTGGTTCTATTGGAGTTACTGTCAGGGAAGAAATCCTTAACAAACAATGAAATTAATCATATTAGGGAGATCTTTGATCTAAAAGAGAAGAGAGAGGAGAGGATTAGAAGATGGATGGATCCTAAGATAGAGAGCTTGTACCCTATTGATGATGCTCTCAGCTTGGCCTTTTTGGCAATGAATTGCACATCAGAAAAGCCTCTGTCAAGACCAACCATGGGAGAAGTTGTTCTTAGCCTCTCCCTTCTCATGACTCAACACTCTCCTACCACATTAGAGAGATCATGGACTTGTGGGTTAGATGTAGATGTTACAGAAATGCAAACTTTGATAGCAGCTCGTTGA 1776 0.3908 MTSFFLFTNTLFLALMMFFSTTHHILAQLSHTNGTNFSCPVDSPPSCDTYVTYFAQSPNFLTLTSISDLFDTSPLSIARASNIKDENQNLVPGQLLLVPVTCACSGSNSFSNISHMIKEGESYYYLSTTSYENLTNWETVQDSNPNYNPYLLPVGIKVVIPLFCKCPSNYHLNKGIEYLITYVWHNNDNVSLVASKFGVSTQDIISENNFSHQNFTAATNFPILIPVTQLPSLSQSYSSSERKRSNHIHIIISIGISLGSTLLIALLVLVSVTCLRKRKSSENKSLLSVEIAGKKLISGVSNYVSKSILYEFRLIMEATLNLNEQCKIGESVYKAKLDGQVLAVKKVKEDVTEEVMILQKVNHLNLVKLMGVSSGHDGNHFLVYEFAENGSLHNWLFSNSSTGSRFLTWSQRISIAVDVAMGLQYMHEHTQPSIVHRDITSSNILLDSNFKAKIANFSVARTSINPMILKVDVFGYGVVLLELLSGKKSLTNNEINHIREIFDLKEKREERIRRWMDPKIESLYPIDDALSLAFLAMNCTSEKPLSRPTMGEVVLSLSLLMTQHSPTTLERSWTCGLDVDVTEMQTLIAAR* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3253 591 Pfam LysM domain 62 99 IPR018392 -
Lja4g3253 591 Pfam Protein tyrosine and serine/threonine kinase 345 463 IPR001245 GO:0004672|GO:0006468
Lja4g3253 591 ProSitePatterns Tyrosine protein kinases specific active-site signature. 434 446 IPR008266 GO:0004672|GO:0006468
Lja4g3253 591 SUPERFAMILY Protein kinase-like (PK-like) 306 564 IPR011009 -
Lja4g3253 591 ProSiteProfiles Protein kinase domain profile. 290 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3253 591 Gene3D Phosphorylase Kinase; domain 1 301 386 - -
Lja4g3253 591 ProSiteProfiles LysM domain profile. 51 98 IPR018392 -
Lja4g3253 591 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 17 591 - -
Lja4g3253 591 Gene3D Transferase(Phosphotransferase) domain 1 387 466 - -
Lja4g3253 591 Gene3D Transferase(Phosphotransferase) domain 1 467 573 - -
Lja4g3253 591 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 17 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3253 Lja-Chr4 61275593 61277368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3253 46 561 Receptor kinase-like Gene Family AT2G23770 29.597 3.04e-72 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lja4g3253 PK_Tyr_Ser-Thr 3.9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3253 - - vra:106777834 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3253 4 61275593 61277368 Lja4g3253 4 61275593 61277368 ECH