Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3242 ATGGGAACTGGGGAAGAGAGCACAGCTAAACCTTCTAAGTCATCTGTGTCAACTCAGGAGATACCTACAGCACCATCATATCCAGATTGGTCAAGCTCTATGCAGGCCTATTATGCTTCTGGAGCCGCTCCACCTCCCTATTTTGCCTCAACTGTTGCTTCCCCAACTCCCCATCCCTATATGTGGGGAAGCCAGCATCCTTTAATGCCGCCATATGGGACTCCCGTCCCGTATCCAGCTTTATACCCTCCTGGCAATATCTATGCTCATCCTGGCATTGCAGTGACTCCAAGTCCTATGCAGCAAAGTACTGAGATTGAAGCGAAGGGAACTAATGGAAAAGATCGAGATTCATCCAAAAAATTGAAGGGAACCTCTGCAAATACATGTGCCAAAGCAGGGGAGAGTGGAAAGGCCGGCTCAGGTTCAGGCAATGATGGCAATTCACATAGTGCTGAAAGTGGTTCAGACGGTTCATCAAGCGCTAGTGATGAGAATACTAACCAACAGGAATCAGCTACAAACAAGAAGCGAAGCTTTGACCAGATGCTTGTTGATGGAGCCAATGCACAGAACAATTCTGCTGGTGCCATTTCTCAATCCCCTGTGCCTGGACAGCCTGCAACTAATCTTAATATTGGAATGGATTTATGGAATGCATCTTCTGGCGCCCCTGGAGCTGTTGCTACTTCGGCCATAATGGGACGTGAGGTTGTACTTAGTGAACAATGGATACAAGATGAACGTGAGCTAAAAAGACAGAAAAGAAAACAGTCTAACCGAGAGTCAGCTAGGAGGTCAAGACTACGCAAGCAGGCTGAGTGTGAGGAGTTACAAAAGAGGGTGGAAATGCTGGGAAATGAGAATCAAACTCTTAGAGAAGAGCTCCGGAAACTTTCTGAAGAATGCGAGAAGCTTACATCTGAAAATAGTTCTATTAAGGAAGAGTTGGACCGGTTGTGTGGGCCAGAAACAGTTGCTAACCTTGGATGA 993 0.4663 MGTGEESTAKPSKSSVSTQEIPTAPSYPDWSSSMQAYYASGAAPPPYFASTVASPTPHPYMWGSQHPLMPPYGTPVPYPALYPPGNIYAHPGIAVTPSPMQQSTEIEAKGTNGKDRDSSKKLKGTSANTCAKAGESGKAGSGSGNDGNSHSAESGSDGSSSASDENTNQQESATNKKRSFDQMLVDGANAQNNSAGAISQSPVPGQPATNLNIGMDLWNASSGAPGAVATSAIMGREVVLSEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQKRVEMLGNENQTLREELRKLSEECEKLTSENSSIKEELDRLCGPETVANLG* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3242 330 CDD bZIP_plant_GBF1 253 303 IPR045314 GO:0003700|GO:0006355
Lja4g3242 330 MobiDBLite consensus disorder prediction 84 213 - -
Lja4g3242 330 PRINTS cAMP response element binding (CREB) protein signature 265 285 - -
Lja4g3242 330 PRINTS cAMP response element binding (CREB) protein signature 285 302 - -
Lja4g3242 330 PRINTS cAMP response element binding (CREB) protein signature 247 263 - -
Lja4g3242 330 SMART brlzneu 248 312 IPR004827 GO:0003700|GO:0006355
Lja4g3242 330 SUPERFAMILY Leucine zipper domain 251 307 IPR046347 GO:0003700|GO:0006355
Lja4g3242 330 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 250 313 IPR004827 GO:0003700|GO:0006355
Lja4g3242 330 Coils Coil 261 316 - -
Lja4g3242 330 MobiDBLite consensus disorder prediction 251 272 - -
Lja4g3242 330 Pfam bZIP transcription factor 248 310 IPR004827 GO:0003700|GO:0006355
Lja4g3242 330 PANTHER G-BOX-BINDING FACTOR 1 1 329 - -
Lja4g3242 330 MobiDBLite consensus disorder prediction 141 213 - -
Lja4g3242 330 Pfam G-box binding protein MFMR 2 93 IPR012900 -
Lja4g3242 330 MobiDBLite consensus disorder prediction 1 27 - -
Lja4g3242 330 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 329 IPR044827 GO:0003700|GO:0006355|GO:0043565
Lja4g3242 330 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 255 270 IPR004827 GO:0003700|GO:0006355
Lja4g3242 330 Gene3D - 251 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3242 Lja-Chr4 61107879 61111211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3242 1 329 bZIP Transcription Factor Family AT4G36730 53.293 2.28e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja4g3242 MFMR 2.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3242 K09060 - gmx:778191 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3242 4 61107879 61111211 Lja4g3242 4 61107879 61111211 ECH
Lja2g0428 2 3928419 3932417 Lja4g3242 4 61107879 61111211 ECH