Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3241 ATGAGAGTTCCCGTATCCTCATCATCATCATCTACACAAGCCAACACATCAAAACTCGCCCAAAACGTGATCCTCCACACCACCCCTCCTAATCCCAACACCATCAACAACAACAATCAAAACCTGTGCTACGAGCCCAAATCAGTGCTTGATCTTTGTCGTAGTCCAAGTCCTGAGAAGAAAACCACTGCTCCAAAGCCAGAACCAGACGAACAACAACATAGTATAGAAGAACAATTGGAAGATCATGTGTTGCCTAATTTGGACTGGTGGGATTCCATAATGAAGGATTTGGGTTTACACGACGATTCTACAACACCCCTTTTGAAGACTAATTCTGATAGTTCTTCTCTTAATTCCAATCCATGCCTCCCTGAAATTTACCCAAACCAACCCTTTGATCAACCTCAAGACTTCACCAGCCTCTCTGAAATTTACTCCAATCAAAGCCTGGCCTATAATTTCACCAACACCACCACCCCTAGCCCCAGTTTAGACCCTTCAATTCATGACTTCAACCCACAAACACACAACAACAATTGGGATTTCATCGAAGAGCTAATCCGCGCCGCGGATTGCTTCGATAGCAACCAGCTCCAGCTCGCTCAAGCGATACTGGAGCGGCTCAACCAACGGCTTAGATCGCCGTCAGGTAAGCCGCTCCATAGAGCCGCTTTCCACTTCAAAGATGCTCTGCAATCGCTTTTGTCCGGCTCGAACCGGACAAATGCACCGCCAAGGCTTTCATCCATGGCGGAGATTGTGCAGAGCATCAGGATCTTCAAGGCCTTTTCAGGAATTTCACCGATCCCGATGTTTTCCATCTTTACCACCAATCAAGCTCTGCTTGAAGCGCTTCATGGTTCTTTGTTCATGCACGTTGTGGATTTCGAGATCGGCCTCGGAATCCAGTACGCTTCTCTCATGAAGGAGATCGCCGAGAAGGTCGGTGCGGGGAGTGGCTCCGCCACGCTCCTCCGCATCACCGCCGTGGTTCCGGAAGAGTGCGCCGTGGAGAGCCGACTCGTTCGGGAGAATCTCAACCAGTTCGCGAACGATGTCGGAATCCGCGTCCAGGTCGACTTCGTTCCGCTCCGGACCTTTGAATCGGTGTCGTTTAAGGCCGTCAGGTTCGTCGACGGCGAGAAGACCGCCGTGCTGTTGTCACCGGCGATTTTCATCCGCCTCAGTGCCGGAGCCAGCGGAGGAAATGGAATCGCGGCGTTTCTCGCCGACGTGCGGAGGATATCTCCAGGCGTGGTGGTGTTCGTCGACGGCGAGGGATGGACGGAGGCGGCGGCAGCGTCATCATTCCGCCGCGGCGTGGTAAACAGCCTGGAGTTCTACTCGATGATGCTGGAGTCCTTGGATGCTTCGGTCGCGGCGGGAGGAGGTGGCGACTGGGCGCGGAGGATAGAGATGCTTCTACTGCGTCCGAAGATCTTCGCGGCGGTGGAAGCTGCCGGAAGAAGGTCTCCGCCGTGGCGAGAGGCGTTTTACGGCGCCGGGATGAGGCCGGTGCAGTTGAGCCAGTTCGCGGATTTTCAGGCGGAGTGTTTGTTAGCGAAGGTGCAGATCAGGGGGTTCCACGTGGCGAAACGGCAGGCTGAGTTGGTGCTTTTCTGGCATGAGCGGGCCATGGTTGCCACGTCAGCTTGGCGGTGTTAG 1668 0.5402 MRVPVSSSSSSTQANTSKLAQNVILHTTPPNPNTINNNNQNLCYEPKSVLDLCRSPSPEKKTTAPKPEPDEQQHSIEEQLEDHVLPNLDWWDSIMKDLGLHDDSTTPLLKTNSDSSSLNSNPCLPEIYPNQPFDQPQDFTSLSEIYSNQSLAYNFTNTTTPSPSLDPSIHDFNPQTHNNNWDFIEELIRAADCFDSNQLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDALQSLLSGSNRTNAPPRLSSMAEIVQSIRIFKAFSGISPIPMFSIFTTNQALLEALHGSLFMHVVDFEIGLGIQYASLMKEIAEKVGAGSGSATLLRITAVVPEECAVESRLVRENLNQFANDVGIRVQVDFVPLRTFESVSFKAVRFVDGEKTAVLLSPAIFIRLSAGASGGNGIAAFLADVRRISPGVVVFVDGEGWTEAAAASSFRRGVVNSLEFYSMMLESLDASVAAGGGGDWARRIEMLLLRPKIFAAVEAAGRRSPPWREAFYGAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATSAWRC* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3241 555 ProSiteProfiles GRAS family profile. 174 554 IPR005202 -
Lja4g3241 555 PANTHER SCARECROW-LIKE PROTEIN 15 11 554 - -
Lja4g3241 555 MobiDBLite consensus disorder prediction 1 41 - -
Lja4g3241 555 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 554 IPR005202 -
Lja4g3241 555 Pfam GRAS domain family 184 554 IPR005202 -
Lja4g3241 555 MobiDBLite consensus disorder prediction 61 75 - -
Lja4g3241 555 MobiDBLite consensus disorder prediction 53 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3241 Lja-Chr4 61102886 61104954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3241 80 554 GRAS Transcription Factor Family AT4G36710 56.566 1.12e-171 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja4g3241 GRAS 6.3e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3241 - - cam:101510420 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3241 4 61102886 61104954 Lja4g3241 4 61102886 61104954 ECH
Lja2g0430 2 3938170 3940278 Lja4g3241 4 61102886 61104954 PCT