Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3237 ATGCCTGTTGATTTTGACAATGTTTCCACACCTTCAGGGGAAGCACCTAGTGTTTCTTCCTCTGGTAATCAACCACCACAACCCACAACCAAGAAAAAACGAAACCTTCCTGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCACCGAAGACTCTAATGGCGACGAACAGATTCGTATGCGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCACCGGAGAGGTCACAATCTGCCATGGAAGCTGAGGCAGAGGACGAGCAAGGAGGTGAGGAAGAGGGTGTATGTCTGCCCGGAACCAACGTGTGTCCACCATGACCCTTCTCGAGCGTTGGGTGATCTCACCGGAATTAAAAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGAGAAATGCTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGGTTTGCGGTACCAGAGAGTATAAATGTGACTGCGGCACGGTGTTTTCGAGGAGGGATAGCTTCATTACTCATAGAGCTTTTTGCGATGCGTTGGCAGAGGAGAGTACAAGATCTCAGACTCAGAAGGCGAATTCGGAGTCTGAATCGAAGGTTTTAACGGCTGATTCTTCACCGCCGCCAGCTGCTGCCACTGCCGCCGCCGCTAATGCTTCTACTACTCAGTCAAATAGTGGCATTTCCTCTGCTTTGCAGACACAGAACCTAGAGTTGCCTGAAAATCCCCAACAAATCAGAGAGGAACCACAAGCTGTTGTTGCTACTGCTGCTTTAAATGGGAGCTGCAGCAGCAGCAGCTGCACCACCACAATCACTGCCACTACCACCTCCACCTCAATTGCCAATGGTAGTGGTGCTACTAATAATAGCTGTAGTGTGTTTGCAAGCTTGTTTGCCTCCTCAACCGCATCTGGGAGCCTGCACTCTCAAGCACAGCCAGCATTCACGGACCTAATTAGAGCCATGGGATGTCCCGACCGCCCTGCAGACCTCTCCCTCCCGGCTCCTTCGTCATCTGAGGCCATATCTCTCTGCCTCTCCACCAATCACGGACCATCCATTTTCGGAACTGGAGGGCAGCTGGAGTACCGCCAGTACATGCCATCGCCGCAGCCGCCAGCCATGTCCGCCACTGCATTGCTGCAGAAGGCTGCTCAGATGGATGCTGCCGCCACAAATGCCTCATTGCTTCGCGGGTTGGGCATTGTGTCATCGTCTTCAGCGGCTTCAACTTCATCCGGCCAGCAAGATAGCCTGCAATGGGGTCAGGTGAAAGTGGAGCGGGATAGTGATGGGTTTCCTTCCGGGCTTGGACTTGGGCTTCCTAGTGATGGCGGTTCAGGACTGAAGGAATTGATGATGGGGACACCTACGGTGTTCGGTGATCCTAAGCAGACCACCCTTGATTTCCTAGGATTGGGGATGGCTGTGGGTGGCAGTTCTGGTGGAGGCATATCTGCACTCATGACATCTATTAGTGGCGGTTTCGATGTTACGACATCATTTGGTAATGGAGGAGAGTTCTCTGGCAAGGACATTGGGAGGAGCTCATGA 1578 0.5184 MPVDFDNVSTPSGEAPSVSSSGNQPPQPTTKKKRNLPGMPDPEAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDALAEESTRSQTQKANSESESKVLTADSSPPPAAATAAAANASTTQSNSGISSALQTQNLELPENPQQIREEPQAVVATAALNGSCSSSSCTTTITATTTSTSIANGSGATNNSCSVFASLFASSTASGSLHSQAQPAFTDLIRAMGCPDRPADLSLPAPSSSEAISLCLSTNHGPSIFGTGGQLEYRQYMPSPQPPAMSATALLQKAAQMDAAATNASLLRGLGIVSSSSAASTSSGQQDSLQWGQVKVERDSDGFPSGLGLGLPSDGGSGLKELMMGTPTVFGDPKQTTLDFLGLGMAVGGSSGGGISALMTSISGGFDVTTSFGNGGEFSGKDIGRSS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3237 525 Gene3D Classic Zinc Finger 39 106 - -
Lja4g3237 525 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Lja4g3237 525 MobiDBLite consensus disorder prediction 222 236 - -
Lja4g3237 525 MobiDBLite consensus disorder prediction 193 236 - -
Lja4g3237 525 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Lja4g3237 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 524 - -
Lja4g3237 525 MobiDBLite consensus disorder prediction 1 43 - -
Lja4g3237 525 SMART c2h2final6 136 156 IPR013087 -
Lja4g3237 525 SMART c2h2final6 60 82 IPR013087 -
Lja4g3237 525 SMART c2h2final6 101 131 IPR013087 -
Lja4g3237 525 Gene3D Classic Zinc Finger 114 195 - -
Lja4g3237 525 MobiDBLite consensus disorder prediction 10 31 - -
Lja4g3237 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Lja4g3237 525 MobiDBLite consensus disorder prediction 193 210 - -
Lja4g3237 525 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Lja4g3237 525 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3237 Lja-Chr4 61043439 61046373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3237 1 525 IDZ Gene Family AT5G66730 58.152 7.82e-178 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g3237 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3237 K25869 - gmx:100783947 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3237 4 61043439 61046373 Lja4g3237 4 61043439 61046373 ECH
Lja2g0433 2 3954238 3957623 Lja4g3237 4 61043439 61046373 ECH
Lja2g0433 2 3954238 3957623 Lja4g3237 4 61043439 61046373 PCT