Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3234 ATGGAGAAGGGTGGCAATGAAGACCAGGCCTCAACGCTCAACAAATATGCCTTAGGATGCGTCATAGTGGCTTCAATGGTAGCCATCATATCCGGTTATGATACTGGTGTTATGAGTGGAGCTCTCCTATTCATAAAGGAAGATATTGGAATCAGTGATACCGAACAAGAAATTCTAGCTGGAATCTTAAATCTTTGTGCATTGGTAGGATGCTTAGTTGCTGGAAGAACCTCTGATTACATTGGTCGCCGCTACACAATCTTATTAGCCTCTTCCCTCTTCTTGATTGGTGCAGTTTTCATGGGGTATGGTCCAAACTATGTTATATTAATGATTGGGAGATGTGTTTGTGGTGTGGGTGTGGGGTTTGCTCTCACAACAGCACCAGTTTACGCTGCAGAGATTTCCTCTGCATCATATCGGGGTTTTCTATCTTCCTTACCTGAGCTATGCATTGGTCTTGGGATTTTTACTGGATATATCTCAAACTACTTCTTAGGGAAACTAGCTTTGAAACTTGGATGGAGACTGATGCTTGGTCTTGCAGCAATTCCATCACTTGGATTGACTTTGGGCATTCTAACCATGCCAGAGTCTCCAAGGTGGTTGGTGATGCAGGGTCGTTTACGAGACGCCAAGAATGTCCTTTTGGAAGTTTCTAATACCACAGAAGAGGCTGAACTTCGCTTCAGGGATATAATAGTTGCTGCTGGGTTTGATGAGAATTGCAATGATGAGGTTGTGAACCAGCCTCAAAAGTCCCACCAGGGTGAAGGGGTTTGGAAAGAGTTGTTCCTGAGGCCCACACCTCCTGTTCGTCGAATGTTGATTGCTGCTATTGGGATTCACTTCTTTGAGCATGCAACTGGCATTGAAGCTGTGATGTTGTATAGCCCAAGAATCTTTAAGAAAGCTGGTGTTACAACCAAGGACAAGCTCTTACTTGCAACAATTGGAGTAGGTCTTACAAAGATTGTTTTTTTGTCAATATCCACATTCTTGCTTGATAGAGTTGGTAGAAGACGCCTCTTACAAATAAGCACTACGGGAATGATTTTTGGGCTTACAATTTTAGGCTTCAGCTTGACCATAGTAGATCATTCCAGCAAAAAGCTCTTGTGGGCCTTGAGCCTTAGCATTGTGGCCACATACACTTTTGTTGCTTTCTATAATGTTGGGCTTGCGCCAGTAACATGGGTGTATAGTTCAGAGGTATTTCCTTTGAGGTTGAGAGCACAAGGGAATAGCATAGGAGTTGCGGTAAATAGAGGCATGAATGCAGCTATTTCCATGAGTTTTATTTCCATCTACAAAGCAATCACTATAGGTGGGGCCTTTTTTTTATTTGCTGGCATGTCTGTATTGGCTTGGGTGTTCTTCTACTTTTGCCTTCCTGAAACCAAGGGCAAGTCCTTAGAAGAAATGGAAATGGTCTTCTCGAAATCTGGTGATAAAAATGTAGGGATCGAGATGAACTGA 1479 0.4293 MEKGGNEDQASTLNKYALGCVIVASMVAIISGYDTGVMSGALLFIKEDIGISDTEQEILAGILNLCALVGCLVAGRTSDYIGRRYTILLASSLFLIGAVFMGYGPNYVILMIGRCVCGVGVGFALTTAPVYAAEISSASYRGFLSSLPELCIGLGIFTGYISNYFLGKLALKLGWRLMLGLAAIPSLGLTLGILTMPESPRWLVMQGRLRDAKNVLLEVSNTTEEAELRFRDIIVAAGFDENCNDEVVNQPQKSHQGEGVWKELFLRPTPPVRRMLIAAIGIHFFEHATGIEAVMLYSPRIFKKAGVTTKDKLLLATIGVGLTKIVFLSISTFLLDRVGRRRLLQISTTGMIFGLTILGFSLTIVDHSSKKLLWALSLSIVATYTFVAFYNVGLAPVTWVYSSEVFPLRLRAQGNSIGVAVNRGMNAAISMSFISIYKAITIGGAFFLFAGMSVLAWVFFYFCLPETKGKSLEEMEMVFSKSGDKNVGIEMN* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3234 492 ProSitePatterns Sugar transport proteins signature 1. 74 91 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja4g3234 492 ProSitePatterns Sugar transport proteins signature 2. 116 141 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja4g3234 492 TIGRFAM SP: MFS transporter, sugar porter (SP) family 14 475 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja4g3234 492 Gene3D MFS general substrate transporter like domains 9 483 IPR036259 -
Lja4g3234 492 SUPERFAMILY MFS general substrate transporter 10 476 IPR036259 -
Lja4g3234 492 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 9 485 IPR045262 GO:0015144
Lja4g3234 492 PRINTS Sugar transporter signature 380 401 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja4g3234 492 PRINTS Sugar transporter signature 28 38 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja4g3234 492 PRINTS Sugar transporter signature 111 130 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja4g3234 492 PRINTS Sugar transporter signature 403 415 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja4g3234 492 PRINTS Sugar transporter signature 286 296 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja4g3234 492 ProSiteProfiles Major facilitator superfamily (MFS) profile. 20 468 IPR020846 GO:0022857
Lja4g3234 492 PANTHER POLYOL TRANSPORTER 3-RELATED 9 485 - -
Lja4g3234 492 Pfam Sugar (and other) transporter 21 479 IPR005828 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3234 Lja-Chr4 60993971 60995993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3234 8 488 Organic Solute Cotransporters AT4G36670 64.657 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3234 - - gmx:100806930 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0439 2 4035309 4037911 Lja4g3234 4 60993971 60995993 PCT
Lja4g3234 4 60993971 60995993 Lja2g0440 2 4039926 4042396 PCT