Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3231 ATGTCTTCCCCTCATAACTCTTCACCTGATAACTCCACACCTGACAATTCCACACCTGATAATTCCACCCCAAATAACTCGGTTCCTGATAACTCCACGCCTGATAATTCCACCCCTGATAATTCAACCCCTGATAATTCCACTCCTGATAATTCAACCCCTGATAATTCCACCCCAGATAACTCATCATCTTCTTCTCATTCCACTCCTTCAGTGCTAAATCAATCTCCAACACCACCTTCCGGGTCACACAAATCGTTATCAAATCAAGGCAAGGACATCGACACCAAGGCAATAATTGGAGGTGCAGTTGGAGGAGGGTTCATTATTCTTCTCTTGGTGATTATTTGTTTTCTTTGCTGTAAGAAGAAGAAGAAGAGAAATCAAAATTACTATTATGGAGATCCTTCCCTTGCAAAAGGAAGTAACTATTACAACAACGGGCAACACCCCCACCCTAATTGGCAAACAGGTCCAGGTCCACATTCTGGGGAACATGTTGTGAGGGTACAAAATTCAGGTAATGGAATGGGTCCTCCTAGTGGTTCTTGGGGTGCACCACATCCTCTAATGAATAGTGGCGAAATGAACAATTACTCAAATGGAATGGGGATGGGAATGGGAATGGGAATGGGATCATCCTCTCTACCTCCTCCCTCTCCGGGTCTTTCTCTTTCACTCAGTGGGGGTACCTTCACCTTGGAGGAATTGGCAGCAGCCACTAGAGGATTTGCTAATGAGAACATCATAGGACAAGGTGGATTTGGTTATGTCCACAAGGGGATATTACCTAATGGAAAGGAAGTTGCTGTTAAGAGTTTAAAATCAGGTAGTGGGCAAGGTGAACGTGAGTTCCAAGCTGAGATTGACATCATTAGCCGCGTTCATCATCGTCATCTTGTATCGCTTGTCGGATACTGTATTTCTGGTGGCCAGAGAATGTTGGTGTATGAATTTGTGCCTAACGATACTTTAGAACACCACCTTCATGGAAAGGGTGTGCCTACTATGGATTGGCCAACTAGAATGAGAATTGCGCTAGGATCCGCAAAAGGGCTCGCCTACCTTCATGAAGATTGTAGTCCTCGCATAATCCATCGTGATATCAAAGCTTCTAATGTCCTCATTGATAATAGCTTCGAAGCTAAGGTAGCTGATTTTGGATTGGCAAAATTGACGACTGATACTAATACACATGTCTCAACTCGTGTCATGGGAACTTTTGGATACCTAGCCCCAGAATATGCATCAAGTGGAAAATTATCAGAGAAGTCTGATGTTTTCTCATTTGGAGTCATGCTATTGGAACTCATAACCGGGAAGCGACCTTTGGATTTGACAAATGAAATGGATGAAAGCTTGGTGGACTGGGCTCGACCACTCTTGAATCGTGTGCTGGAGGAGGATGGAAACTTTGGAGAGTTGGTGGATCCATTTTTGGAGGGCAACTACAATGCTCAAGAAATGGCAAGAATGGTAGCTTGCGCTGCTTCGAGCATTCGTCATTCTGCCAAAAAGCGTGCAAAAATGAGCCAGATAGTAAGAGCATTGGAAGGAGATGTCTCACTAGAAGACTTGAAGGAGACAATGATGAAGACTCCTGGGCATAGCAGCAATTTCACCTCTTCATCTGGTCATAGCTCAGACTATGATACAATGCAATACAATGCTGATATGATGAAGTTCAGAAAGGCAATAATGTCAAGTCAAGAATTTGGTACTAGCAACGAGTTCTCTAGTAAGGAGATGGGCCATTAA 1758 0.4369 MSSPHNSSPDNSTPDNSTPDNSTPNNSVPDNSTPDNSTPDNSTPDNSTPDNSTPDNSTPDNSSSSSHSTPSVLNQSPTPPSGSHKSLSNQGKDIDTKAIIGGAVGGGFIILLLVIICFLCCKKKKKRNQNYYYGDPSLAKGSNYYNNGQHPHPNWQTGPGPHSGEHVVRVQNSGNGMGPPSGSWGAPHPLMNSGEMNNYSNGMGMGMGMGMGSSSLPPPSPGLSLSLSGGTFTLEELAAATRGFANENIIGQGGFGYVHKGILPNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCISGGQRMLVYEFVPNDTLEHHLHGKGVPTMDWPTRMRIALGSAKGLAYLHEDCSPRIIHRDIKASNVLIDNSFEAKVADFGLAKLTTDTNTHVSTRVMGTFGYLAPEYASSGKLSEKSDVFSFGVMLLELITGKRPLDLTNEMDESLVDWARPLLNRVLEEDGNFGELVDPFLEGNYNAQEMARMVACAASSIRHSAKKRAKMSQIVRALEGDVSLEDLKETMMKTPGHSSNFTSSSGHSSDYDTMQYNADMMKFRKAIMSSQEFGTSNEFSSKEMGH* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3231 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 364 376 IPR008271 GO:0004672|GO:0006468
Lja4g3231 585 ProSiteProfiles Protein kinase domain profile. 244 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3231 585 MobiDBLite consensus disorder prediction 1 90 - -
Lja4g3231 585 Gene3D Transferase(Phosphotransferase) domain 1 320 534 - -
Lja4g3231 585 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 6 584 - -
Lja4g3231 585 SUPERFAMILY Protein kinase-like (PK-like) 219 517 IPR011009 -
Lja4g3231 585 Gene3D Phosphorylase Kinase; domain 1 224 319 - -
Lja4g3231 585 PANTHER RECEPTOR-LIKE KINASE 6 584 - -
Lja4g3231 585 SMART serkin_6 244 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3231 585 ProSitePatterns Protein kinases ATP-binding region signature. 250 272 IPR017441 GO:0005524
Lja4g3231 585 Pfam Protein tyrosine and serine/threonine kinase 247 447 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3231 Lja-Chr4 60964242 60967259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3231 63 564 Trihelix Transcription Factor Family AT1G70460 49.509 7.01e-152 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lja4g3231 PK_Tyr_Ser-Thr 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3231 - - gmx:100800744 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0447 2 4079895 4083366 Lja4g3231 4 60964242 60967259 ECH
Lja4g3231 4 60964242 60967259 Lja4g3231 4 60964242 60967259 ECH
Lja2g0447 2 4079895 4083366 Lja4g3231 4 60964242 60967259 PCT