Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3221 ATGGAAATGAGAGAGATGCCTTCCACTTTGATATATAATCTCCCCAACAGAGATTCCTCTTCTCCATCTCTACCTTCAAGTAGTGATCAGCCTTCTCAAACTCACACAATAATCTTCAATCATCCACCTAAACTTTCTCATAACCACCACCATCATATTTATACCCCTTCTTCTACTTCTCCTCCTCTTCCACCAAACTCAGTTCAACTTCAACAACAACCCACAAGAGATCCAGATCCAAGTTCTTCTTCTTCTCTATTAATTAGATACAGAGAATGCCTGAGGAACCATGCAGCGAGATTAGGGAGTCATGTCACAGATGGATGTGGCGAGTTCATGCCAAATGGAGAACAAGGAACCCCAGAATCATTGATCTGTGCTGCTTGCGAGTGCCACCGCAATTTTCACAGAAAAGAGGCTCAAGGAGAACCTCAACAAGTTTCCAACTATCATCACAACAAAAGCAATGGTCAGAACAGGATTCACCCTTCTTCTCTGCATCATAAACATGGATTTTCTTCGTCACCAGGGTTGATGATGGGCTTTGGGGGAGGCAGTGGAGGCCCTGCAGCTGAATCCTCAAGTGAAGATCTCAACATGTTTCACCAGTCCAATGATGGAGGCCAATTATCAGTGCAGCCACCACTATCATCAAAGAAGAGGTTCAGAACTAAGTTCACCCAGCAACAAAAGGACAGGATGATGGAGTTTGCTGAGAAACTGGGGTGGAAGATCCAGAAGCAAGATGAAGAGGAAGTGAAGCAATTCTGCTCTCATGTTGGTGTAAAAAGACAGGCTTTCAAGGTTTGGATGCACAATAGCAAGCAAGCAATGAAGAAGAAGCAAATCATGTAA 855 0.4374 MEMREMPSTLIYNLPNRDSSSPSLPSSSDQPSQTHTIIFNHPPKLSHNHHHHIYTPSSTSPPLPPNSVQLQQQPTRDPDPSSSSSLLIRYRECLRNHAARLGSHVTDGCGEFMPNGEQGTPESLICAACECHRNFHRKEAQGEPQQVSNYHHNKSNGQNRIHPSSLHHKHGFSSSPGLMMGFGGGSGGPAAESSSEDLNMFHQSNDGGQLSVQPPLSSKKRFRTKFTQQQKDRMMEFAEKLGWKIQKQDEEEVKQFCSHVGVKRQAFKVWMHNSKQAMKKKQIM* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3221 284 Pfam ZF-HD protein dimerisation region 88 140 IPR006456 -
Lja4g3221 284 ProSiteProfiles 'Homeobox' domain profile. 217 281 IPR001356 GO:0003677
Lja4g3221 284 MobiDBLite consensus disorder prediction 1 84 - -
Lja4g3221 284 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 35 281 - -
Lja4g3221 284 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 281 - -
Lja4g3221 284 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 90 139 IPR006456 -
Lja4g3221 284 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 89 139 IPR006456 -
Lja4g3221 284 MobiDBLite consensus disorder prediction 12 41 - -
Lja4g3221 284 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 219 276 IPR006455 -
Lja4g3221 284 MobiDBLite consensus disorder prediction 64 84 - -
Lja4g3221 284 Gene3D - 208 280 - -
Lja4g3221 284 SUPERFAMILY Homeodomain-like 207 280 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3221 Lja-Chr4 60836638 60837912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3221 66 283 ZF-HD Transcription Factor Family AT2G18350 50.000 4.03e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja4g3221 ZF-HD_dimer 2.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3221 - - ccaj:109810490 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3221 4 60836638 60837912 Lja4g3221 4 60836638 60837912 ECH
Lja2g0463 2 4239179 4240559 Lja4g3221 4 60836638 60837912 ECH
Lja2g0463 2 4239179 4240559 Lja4g3221 4 60836638 60837912 PCT