Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3219 ATGGGAACTGATGGTTGTGAAGTGGAGACATTACCTTACTCCTTTAAGGTACATTGTAGAATGTGCACAGAACTCAAGAAATTACTTGAGAGAATCTTAAGGATATTTCCGCTTATAGAGGCGGCACGCCCTCGGTCCTCATCAGGAATACAGTCTCTGTGTTCGCTAAACAGTGCAATTGACAAAGCCAAACAACTTCTGCAACATTGCTCGGAATCTAGTAAACTCTACCTTGCAATGTCAGGGGAGTCAATACTCTCAAAATGCCAAAAGGCCAAAAGATCATTAGAGAAAAGCTTAATCCAGATTCAGGATATGGTTCCAGTTATGTTGGCTGCAGAGATTTCTCGAATGATTCATGATCTTGGATATGTGACATTTGTCCTGGACTTTGCTGAAGAAGAGGCTGGTAGGGTTATGAGAGAATTACTGCAGCAAGGTCATTCCGCCTCAGATAAAGATTCAATTGAAAATTCTGATGTTAAATCTCTTCAGTTTGCAGTGGCAAGACTTAATATTACATCCTCAACTGCCGTCGTAATAGAGAAACGATCTATTAGGAAGTTGTTGTTGAATGTTAGACCAAATGACCAAACAAAAAAGATGATCTTGAAAAATCTTTTGTATCTTCTGACAAAGTACAGAAGTTTCATCACAGGAGAACAAATGGAGGCCTATCATCTTAGTGAAGGACCAGTAACAACTGAGAACATGGGTCATGTTAATCATGTTATGTCAGAACCAGACCTGAACCGTGATCAAAATAGAACTCACGCCGGCGAGTTGGGAAGAGTTACACCACCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAGTTACATATGAAAGGATGTGGATACAGAAATGGCTTGATGAGGGTAATGGAATATGTCCAAAAACTAAGAAGAAACTGGTTCATAGGGCACTGACTCCTAATGTTGCCATAAAGGACTTAATAGTAAAGTGGTGTGAAATTAATGAAGTCTCTATTTCTGATCCAAGTAGGCAAGTGGAAGATTTTCGCTCGTGGGAATCTTCCTCCAATTCCATTATGAGTTTTGGAAGTTCTATGAATGATTTGAATTTGCCAATGGATTTTAGTGGCATCTCACTTGGATCGTTAGATACTAGTATTGGTTCAGGTTTCTCACATGTAAAGGCCAGTCATGGCTTAAATTTGATGTTGGTTAAAACTAGTGAGGATTCTCACAGGCATCAGTCAACACATGACGCAGATCTGACGCGCTTGTCTAAACTCCATGATAGTCAATGGGATTCTCAGTGCCAAGTCATTGAAGATATGAAAATAAATTTCAAATGCAATTACCAAGCTTCTTGCTCTGTGTCATTTGAGAATTTCATTGACCCACTCACAAGATTTCTGAGCACTGCAAATGAGATGCATGATGTGAAAGCTCTGCGAGGTGGAACTCAATTGCTTTTGGAATTTATGAAATACCACAGAAATGGTTTGAAAAATTTAAGTGAAGATACATGCACTGTGTTAGCAAGTCTTCTTGAGTCAGAAGTGATTGAAGAAGCTCTTGCCATAATGGAAGTACTTTCTGGGTATTGGTCTGATAAAGCTAACATTGCAGCTTCGAGTGCTCTCTCTTCTGTTTCAAAGTTCCTTGATTCTGGTAACAAAGAGTTCCAACGAAAAGCCATTAGAATGGTGTGTAAATTTTCATACAATGGCGAACTTTGTCCTTACATTGTATCTCTCGGGTGCATCTCGAAATTACTGCCGTGTTTTGAAGACAAGGCCCTTTCGAGAGACTGCATATGCATATTGAAAAACCTTTGTGATACCGAAGAGGGTAGGATGTCTGTTGTTGAAACCAAAGGATGCATATCTTTTATTGTTGAAGTAATTGGGAGTGGCAGTGATGAGGAAAAAGAACTTGCACTTGCTATTGTGCTCTCTTTATGCTCTCAACGCTTGGAATACTGTGAGCTGGTTTTGTATGAGGGTATTATACCTTCTCTCGTCATTATCTCCAACACAGGAAATGATAGCACAAAGGCGTATGCACTGGAACTGCTCCGGCAATTGAGGGAGGTTGACAGCTTTGACAATAGCGATTCCTCTGAGCCGAATCTCAACAACCCTCGAGATTCTAACAATCGGTTCGAAGAAAAGAAACCGTCAAAGAAGTCGACATTTTTTAAGAAACTAGGTCTGTTCTCAAAACCCAGTTCACTTGCAGCAAAAAGCAAGAAATGA 2259 0.3997 MGTDGCEVETLPYSFKVHCRMCTELKKLLERILRIFPLIEAARPRSSSGIQSLCSLNSAIDKAKQLLQHCSESSKLYLAMSGESILSKCQKAKRSLEKSLIQIQDMVPVMLAAEISRMIHDLGYVTFVLDFAEEEAGRVMRELLQQGHSASDKDSIENSDVKSLQFAVARLNITSSTAVVIEKRSIRKLLLNVRPNDQTKKMILKNLLYLLTKYRSFITGEQMEAYHLSEGPVTTENMGHVNHVMSEPDLNRDQNRTHAGELGRVTPPEEYTCPISLRLMYDPVVIASGVTYERMWIQKWLDEGNGICPKTKKKLVHRALTPNVAIKDLIVKWCEINEVSISDPSRQVEDFRSWESSSNSIMSFGSSMNDLNLPMDFSGISLGSLDTSIGSGFSHVKASHGLNLMLVKTSEDSHRHQSTHDADLTRLSKLHDSQWDSQCQVIEDMKINFKCNYQASCSVSFENFIDPLTRFLSTANEMHDVKALRGGTQLLLEFMKYHRNGLKNLSEDTCTVLASLLESEVIEEALAIMEVLSGYWSDKANIAASSALSSVSKFLDSGNKEFQRKAIRMVCKFSYNGELCPYIVSLGCISKLLPCFEDKALSRDCICILKNLCDTEEGRMSVVETKGCISFIVEVIGSGSDEEKELALAIVLSLCSQRLEYCELVLYEGIIPSLVIISNTGNDSTKAYALELLRQLREVDSFDNSDSSEPNLNNPRDSNNRFEEKKPSKKSTFFKKLGLFSKPSSLAAKSKK* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3219 752 CDD RING-Ubox_PUB 273 313 IPR045210 -
Lja4g3219 752 SMART Ubox_2 270 333 IPR003613 GO:0004842|GO:0016567
Lja4g3219 752 PANTHER U BOX DOMAIN-CONTAINING 2 745 - -
Lja4g3219 752 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 745 - -
Lja4g3219 752 Pfam U-box domain 268 337 IPR003613 GO:0004842|GO:0016567
Lja4g3219 752 SUPERFAMILY RING/U-box 263 341 - -
Lja4g3219 752 SUPERFAMILY ARM repeat 429 697 IPR016024 -
Lja4g3219 752 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 341 IPR013083 -
Lja4g3219 752 MobiDBLite consensus disorder prediction 701 730 - -
Lja4g3219 752 Gene3D - 463 709 IPR011989 -
Lja4g3219 752 ProSiteProfiles U-box domain profile. 266 340 IPR003613 GO:0004842|GO:0016567
Lja4g3219 752 SMART arm_5 576 614 IPR000225 GO:0005515
Lja4g3219 752 SMART arm_5 615 656 IPR000225 GO:0005515
Lja4g3219 752 SMART arm_5 658 698 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3219 Lja-Chr4 60764490 60769824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3219 8 701 U-box Gene Family AT4G36550 37.216 1.65e-137 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3219 - - lja:Lj0g3v0300339.1 1370.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3219 4 60764490 60769824 Lja4g3219 4 60764490 60769824 ECH
Lja2g0467 2 4273154 4277883 Lja4g3219 4 60764490 60769824 ECH
Lja2g0467 2 4273154 4277883 Lja4g3219 4 60764490 60769824 PCT