Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3215 ATGTCGTTGAAAAGCATAGTTCGTGAAATAAGGGAGATGAGGGATGGCATAGGTAGCATATCAAAGCGAGGTGCAGAAGGCAAGCATTGGCTTCGTCGGACAAAGTCACACATTGCTCCGGATGTCCTTGTAACTCCATATGAGCCCGTTCAACAGGGACAGTGGGCAAATTTACCACCGGAATTGCTTTTGGACATAATCCGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGATAGGGCTGTTGTTGTTTTTTGTGCTTCGGTATGTAAATCATGGAGGTCCATTACCAAAGAGATCGTCAAGACTCCTGAACAATGTGGAAGTATCACGTTTCCTATTTCATTGAAGCAGCCGGGTCCTCGTGATTCTCCAATACAGTGCTTTATAAGGAGGAATAGAGTAACTTCTACATATCTATTGTACCTTGGTCTGGTGCCATCGGAGAATGAGGGTAATAAGCTGTTATTAGCTGCCAAAAGGACAAGAAGGGCAACATGCACCAATTTTGTCATATCCTTGGCTGCGGATGATTTTTCTAAAAGCAGCAGCAAATATGTTGGTAAACTGAGGTCTAATTTTTTGGGCACCAAGTTCAATATATACGACAGCCAACCTCCCCATGATGTAGCAATTCAACCAAATTGTCGATCTAGTAGAAGATTTAGTTCTAAGCAAGTTTCACCAAGAGTTCCAGCATGTAACTATCTCGTTAGCACCGTGTCCTATGAGCTGAGTGTTCTCTGCACTAGAGGGCCAAGAAAAATGCACTGCATCATGAACTCTATACCCATCTCAGCTATCCAGGAAGGGGGCAACGCCCCAACTTCAACATCTTTCCCTCAAATACTTGACGAACCTTTTTCTCCCTCTCCAGCACTGAAAGGAAAACGTCCAGCTGCAGATTCAAACTCTGGTAGCCTATCAGAGCTACCAGCATTGAGCCAAGACTCGGTTGAGCCCTTAGTACTGAAAAACAAGGCTCCCAGATGGCACGAACAGCTACAGTGCTGGTGCCTGAACTTCAAGGGTCGTGTTACGGTGGCTTCTGTTAAGAACTTTCAGCTCGCAGCTTCCGTCGATCCATCGCACAATGTTTCTGCCGCGGAGCAAGAAAAGGTGATCTTGCAGTTTGGAAAGATTGGAAAAGACATGTTTACCATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGAGCACCTTTGATACTAAACCAGCCTGTGAATGA 1245 0.4546 MSLKSIVREIREMRDGIGSISKRGAEGKHWLRRTKSHIAPDVLVTPYEPVQQGQWANLPPELLLDIIRRVEESETSWPDRAVVVFCASVCKSWRSITKEIVKTPEQCGSITFPISLKQPGPRDSPIQCFIRRNRVTSTYLLYLGLVPSENEGNKLLLAAKRTRRATCTNFVISLAADDFSKSSSKYVGKLRSNFLGTKFNIYDSQPPHDVAIQPNCRSSRRFSSKQVSPRVPACNYLVSTVSYELSVLCTRGPRKMHCIMNSIPISAIQEGGNAPTSTSFPQILDEPFSPSPALKGKRPAADSNSGSLSELPALSQDSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLAASVDPSHNVSAAEQEKVILQFGKIGKDMFTMDYRYPLSAFQAFAICLSTFDTKPACE* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3215 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Lja4g3215 414 Gene3D - 48 101 - -
Lja4g3215 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Lja4g3215 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Lja4g3215 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lja4g3215 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Lja4g3215 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lja4g3215 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Lja4g3215 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Lja4g3215 414 PANTHER TUBBY-RELATED 1 414 - -
Lja4g3215 414 Pfam F-box domain 55 102 IPR001810 GO:0005515
Lja4g3215 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Lja4g3215 414 Pfam Tub family 116 409 IPR000007 -
Lja4g3215 414 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Lja4g3215 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Lja4g3215 414 MobiDBLite consensus disorder prediction 291 311 - -
Lja4g3215 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3215 Lja-Chr4 60734399 60737878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3215 1 414 TUB Transcription Factor Family AT2G18280 62.530 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lja4g3215 Tub 3.9e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3215 K19600 - gmx:100805380 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3215 4 60734399 60737878 Lja4g3215 4 60734399 60737878 ECH
Lja2g0468 2 4278194 4281008 Lja4g3215 4 60734399 60737878 ECH
Lja2g0468 2 4278194 4281008 Lja4g3215 4 60734399 60737878 PCT