Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3188 ATGTCGACGACAGAATCGCCTAAGCGCGACAAGTGGCAATGGGAGACCGCCACCGCCGGCGCCGCCGCTGGATTCGCCACCGTCGCCGTCATGCATCCCCTCGATGTTGTCCGAACTAGATTCCAAGTTAACGATGGTCGAGTCTCTCATCTCCCCAGATACAACAACACCGCTCACGCCATTTTCTCCATTGCTCGCTCCGAGGGATTGAGAGGATTATATGCTGGCTTTCTTCCTGGGGTTCTTGGGTCAACCATTTCATGGGGTTTATATTTCTTTTTCTATGACAAAGCTAAACAAAGATATGCTAGGAATAGAGAGGAAAAGTTGACCCCGGGTCTTCATCTTGCCTCGGCTGCCGAAGCAGGAGCTATTGTTTCCTTGTGCACAAATCCTGTTTGGCTAGTGAAGACAAGATTGCAGCTTCAGACTCCTCTTCATCAGACACGACCATACTCTGGGCTTTATGATGCATTTAGGACCATAATGAGGGAAGAAGGATTTAGTGCACTTTACCGAGGGCTTGTTCCTGGTCTATTTCTGGTCTCTCATGGTGCTATTCAGTTCACAGCATACGAGGAGCTTCGTAATATTTTTGTTGATTTGAAGAGTAGGGGAAGTACAGTACACCGTGAAAACCCTGATCAACTGTTGAATTCTGTTGATTATGCTGTTCTTGGAGCATCATCGAAGATTGCTGCGATACTTCTAAGCTATCCATTTCAGGTTATACGGTCTCGATTGCAGCAAAGACCTGGTGGTGATGGGGTTCCAAGATATATCGACAGTTGGCATGTTGTGAAAGAAACTGCACGATTTGAAGGTGTTCGTGGTTTTTACAAGGGAATTACCCCGAACCTCTTAAAAAATGCTCCTGCTTCTTCGATAACATTTATTGTTTATGAAAATGTTCTAAAATTACTGAAATTAGCTAGAAAGGAATGA 945 0.4529 MSTTESPKRDKWQWETATAGAAAGFATVAVMHPLDVVRTRFQVNDGRVSHLPRYNNTAHAIFSIARSEGLRGLYAGFLPGVLGSTISWGLYFFFYDKAKQRYARNREEKLTPGLHLASAAEAGAIVSLCTNPVWLVKTRLQLQTPLHQTRPYSGLYDAFRTIMREEGFSALYRGLVPGLFLVSHGAIQFTAYEELRNIFVDLKSRGSTVHRENPDQLLNSVDYAVLGASSKIAAILLSYPFQVIRSRLQQRPGGDGVPRYIDSWHVVKETARFEGVRGFYKGITPNLLKNAPASSITFIVYENVLKLLKLARKE* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3188 314 Pfam Mitochondrial carrier protein 11 105 IPR018108 -
Lja4g3188 314 Pfam Mitochondrial carrier protein 221 309 IPR018108 -
Lja4g3188 314 Pfam Mitochondrial carrier protein 111 200 IPR018108 -
Lja4g3188 314 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 11 310 IPR044712 GO:0006862|GO:0055085
Lja4g3188 314 Gene3D Mitochondrial carrier domain 108 311 IPR023395 -
Lja4g3188 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 110 198 IPR018108 -
Lja4g3188 314 PRINTS Mitochondrial carrier protein signature 74 92 IPR002067 GO:0055085
Lja4g3188 314 PRINTS Mitochondrial carrier protein signature 26 44 IPR002067 GO:0055085
Lja4g3188 314 PRINTS Mitochondrial carrier protein signature 119 141 IPR002067 GO:0055085
Lja4g3188 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 101 IPR018108 -
Lja4g3188 314 PANTHER BNAA09G07970D PROTEIN 11 310 - -
Lja4g3188 314 SUPERFAMILY Mitochondrial carrier 13 303 IPR023395 -
Lja4g3188 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 218 307 IPR018108 -
Lja4g3188 314 Gene3D Mitochondrial carrier domain 1 107 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3188 Lja-Chr4 60346669 60354657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3188 33 308 Chloroplast and Mitochondria Gene Families AT2G47490 38.516 2.02e-49 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3188 K15115 - gmx:100809599 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3188 4 60346669 60354657 Lja4g3188 4 60346669 60354657 ECH