Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3185 ATGAATGATTCTGAAGAAGATAATTGGCTTAATCCGTTTGATGACGACCTTTGTATCATCGATGAGGATGAAAGTCTGAATTCTAACCCTGTCAACGATCCTGAGAACGATGGGAATGAGGATGAAAATTGTTTGAAGGAGGATGAAAATTGTTTGAAGGAGGATGAAAATGGTTTGAAGGAGGGTGAGAATCTGATTGATGTGAATGTAGGGGATAATGAAGGTGGAAATTTTGTGGATGTCGATGAGATGATTGAGACTGTACAGGACAGTCAAAAGGACTCTGATATAGATGTTAAAGAAGCATGTGAATTCTATTCCAAATATGCTCGTTTCCGTGGATTCTCTCCAAGAAAAGATGATGTTTACAAGGATTCTGATGGTAATATTATCTCACGTCAGATAGTGTGCAATAGGGCTGGTCAAAGGCATCAGAAGCATATGCATAATGGTGGTAGAACAAAACAACCTAAGCCTATTACTAGAGTCTGTTGCCTTGCTAGAATTCGATTTCGTTGTGTTTCTAGCAGTAAAAGGTGGAAAGTTGTTTTTTTTTGCGATGAGCACAATCACCCATTAACACCATTTAAGCATGTTCATTTGATTCCAAAATTCCGGCAGTTGAGCGAAGGGGACAAAGCTCAAGCAGATGGTATGAACCTACGGGCTTTGAAGAAATACAGGCACAATGAGTTGGTTTCTGATTTTAAGTCTTCTTATGGTGAGCCTGTTATCACAACTGCACTTAGTGGCATTGAGTATGGAGCTGCAAAAATATTAACCAGGGATATGTTCTGGGAAGTTAAGAGTCAAATTGAAGATGCTCTGGGGATAAATGTGGAGCAAATGGCATGCGAAAAGGATGATGAATATGCAAGTGTAATGGAAGGCATTTATAAGCTGTTGAGGGATGTTCAGAAGAGTCGCAAACCAGGTTGTACATCAAACAGTGCAGCCTTTGATGTGGGTGATCCAACTGTTGTACCGGCTAGAGGTGCCCCCAAGAAGAATAAAACTGGCACCAAGAGAAGGCAGTGCTCAAATTGCAGGGGTACTGGACACACGATTCGTACGTGTCCGGCTTTGCTTTATTCTGATCAAGTCCCTAATACTGAAGGAGGTGAATCTGCAACTGAAGGAAATGAGGACAGCACACACGACGAGGTCAACGTTGGCAGCTTAGATCGGCAAAATAATGGGGCTTCGGTGGCAAGTAAACTTAAATCTCAGCAGCGGGAGCACGGAAATGTGTCGTCATCCACCCAAGTATCTAATTTGCGTTCAAATCAGAACACGGGGTCGAGAAAACAAAATAAGCGTAAGTCTCAGCAGCGAGAAGTCCCAGTCATGATACATTCAAGCCAAGTATCTGGGAATGAATTGACTCAGAGTTCACCGAATAATGCAGGTCGCGGTGATGTGGATAACAACAGAGTTACTTTGTTGCCCCAGCATCCACAGGAAATACCTTTGACCCAAGCATCTGTGAATCAGGTACAGGTTTATAACATGGAGCCTATTGTACAACAAGTCCACTATCCTGTTGTTCGTGCTTCAGCTGGACTTCCATTTTTGCAACCTACTTATGCCGTGAATATGACAGATGGAGTTCAGGTGTTTCCACAGCACCAAAACGTCCAGGTTCCTTACCAAGGAGTTCAGATGCAAACGCTTTTTCAAGCTGGACCTTCTGGCTTACTCCCGACATTCTCATCGACGTTGGCGGCAGTCGATAGGAGACACAATAGAAATTCAAATTTAGGAAATAATTGA 1773 0.4264 MNDSEEDNWLNPFDDDLCIIDEDESLNSNPVNDPENDGNEDENCLKEDENCLKEDENGLKEGENLIDVNVGDNEGGNFVDVDEMIETVQDSQKDSDIDVKEACEFYSKYARFRGFSPRKDDVYKDSDGNIISRQIVCNRAGQRHQKHMHNGGRTKQPKPITRVCCLARIRFRCVSSSKRWKVVFFCDEHNHPLTPFKHVHLIPKFRQLSEGDKAQADGMNLRALKKYRHNELVSDFKSSYGEPVITTALSGIEYGAAKILTRDMFWEVKSQIEDALGINVEQMACEKDDEYASVMEGIYKLLRDVQKSRKPGCTSNSAAFDVGDPTVVPARGAPKKNKTGTKRRQCSNCRGTGHTIRTCPALLYSDQVPNTEGGESATEGNEDSTHDEVNVGSLDRQNNGASVASKLKSQQREHGNVSSSTQVSNLRSNQNTGSRKQNKRKSQQREVPVMIHSSQVSGNELTQSSPNNAGRGDVDNNRVTLLPQHPQEIPLTQASVNQVQVYNMEPIVQQVHYPVVRASAGLPFLQPTYAVNMTDGVQVFPQHQNVQVPYQGVQMQTLFQAGPSGLLPTFSSTLAAVDRRHNRNSNLGNN* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3185 590 MobiDBLite consensus disorder prediction 391 437 - -
Lja4g3185 590 SUPERFAMILY Retrovirus zinc finger-like domains 332 362 IPR036875 GO:0003676|GO:0008270
Lja4g3185 590 MobiDBLite consensus disorder prediction 363 474 - -
Lja4g3185 590 MobiDBLite consensus disorder prediction 325 350 - -
Lja4g3185 590 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 98 226 - -
Lja4g3185 590 MobiDBLite consensus disorder prediction 21 43 - -
Lja4g3185 590 Pfam FAR1 DNA-binding domain 104 194 IPR004330 -
Lja4g3185 590 MobiDBLite consensus disorder prediction 447 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3185 Lja-Chr4 60258419 60261814 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja4g3185 FAR1 6.7e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3185 - - lja:Lj3g3v0948310.1 262.692