Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3181 ATGGCTGGGTTGTTCTCATTAGGAGGAGGAGGAGGAAGAGGGAACCAGGAGGGGGAACATCACGGCGGTGAGATTCCCCCACCGGAAACCCTATTCTGGTACAAACCAAACGACGATGTTTCGTCGTATCGCGGCTTCGAGCTATGGAACCAGCACCAGCAGCAACAGCACCAGCAACAACAGGAAGTAGTTGGAGGAGCAGGGTTAAGGCCTCTCTACTCGGCGGTTGGGGTGGGATCCAGCAGCAGGGTGGTGGTGGGGTCAGATGATCAGAGATCATCGGCGGCGGCGGTGGGGTTTGTGAGGGCGTCGTCGTCGGGGGAGGGAGGAGGGATAAGCTGCCAGGACTGCGGGAACCAAGCGAAGAAGGATTGTCCTCACATGCGGTGCAGGACGTGTTGCAAGAGCCGAGGGTTCGATTGCCAGACGCACGTGAAGAGCACGTGGGTCCCCGCCGCCAAACGCCGTGAACGCCAGCAACAGCTCAACCCTGGTTTCCACAGAACAGACATTTCCAAACGCCCCAGAGATATCATCACTTCTCGTAATAACCAGCAGCTGCACTCTTCTTCAGGGTTAGAGCATGGAAATTTTCCGGCATTGGTGAGTTCTCCGGCAGAGTTCAGGTGTGTGAGGGTTAGCTGCGTGGACGATGCTGATGACAGGTACGCATATCAAACGGCTGTCAACATAGGAGGGCATGTCTTCAAAGGAATCCTCTATGACTATGGTCCAGACAACAACAACAATAATACTAGTCATGATAACAACATGAATGTTCATAATTACATGGCTGGGGATACCTCCCCCGCCGCTCTTGCCGGAGCTCAGCCGCTGAATCTCACCGCCGCTGTCACCGTTGTTTCGTCTTCTGGGGCACTTGTTGATCCTTCCTCCTTGTATCCATCTCCGGTTAACGCCTTCATGACAGGTAGTGGTACGCAATTCTTCCCTCGCACAAGATCTTGA 969 0.5449 MAGLFSLGGGGGRGNQEGEHHGGEIPPPETLFWYKPNDDVSSYRGFELWNQHQQQQHQQQQEVVGGAGLRPLYSAVGVGSSSRVVVGSDDQRSSAAAVGFVRASSSGEGGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQQQLNPGFHRTDISKRPRDIITSRNNQQLHSSSGLEHGNFPALVSSPAEFRCVRVSCVDDADDRYAYQTAVNIGGHVFKGILYDYGPDNNNNNTSHDNNMNVHNYMAGDTSPAALAGAQPLNLTAAVTVVSSSGALVDPSSLYPSPVNAFMTGSGTQFFPRTRS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3181 322 PANTHER PROTEIN SHORT INTERNODES 1 320 - -
Lja4g3181 322 MobiDBLite consensus disorder prediction 1 30 - -
Lja4g3181 322 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 320 IPR007818 GO:0003700|GO:0006355
Lja4g3181 322 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 198 245 IPR006511 -
Lja4g3181 322 Pfam Domain of unknown function (DUF702) 111 246 - -
Lja4g3181 322 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 113 155 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3181 Lja-Chr4 60208438 60211235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3181 1 311 C2H2 Transcription Factor Family AT5G66350 43.417 6.65e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lja4g3181 DUF702 5e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3181 - - lja:Lj0g3v0059359.1 603.208