Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3173 ATGGGTCGTGGGAAGCTTGAGATCAAGTTCATTGAGAATCCAACCAACAGGCAAGTCACCTTCTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCACTCTTCTCTGTGATGCAAAAGTCTCCCTCATCATCTTCTCCAAAAGCCACAAGATGCACGAGTACATCAGCCCTGGCCTTACGACTAAGAAAGTAATTGATCAGTACCAGAGGACCTTGGGGGATATCGATCTGTGGCGTGACCACTATGAGAAAATGCTTGAAAACAAGAAGAGACTGACAGATATTAATAATAAACTCAGAAGGCAGATCAGGCAAAGAATAGGGGAAGGCATGAATAATTTGGATGATCTGAGCTTCCAACAACTGCGCACTCTTGAAGATGATATGGTTTCTTCCACTGAGAAAATACGCGAACGGAAGACTTGGGCTAAAAAAAAAACTATCAGCCAAAAAAACATTAGCCATGGGCCTCCGACTTTGGTTCACACGAAAGGAGCACAAGTCCACGATGGTCTTTGGCACTTGAATAAAGCTCAGACCGAGAAAGTCAGAAGCTTGGAGCAGATGAATGGAAACCTCCTGCAGGAACTTGACTCAAGGACAGTTGCACTGGCAAATGGTGTCTCTAACTTTCACGCATTCAATGAGGAGTACAACCATCTGAATCGTCACCAACATGTAGAAGAGTTTGACTCCTACTATCTGCGCCTTGCTTGA 726 0.4435 MGRGKLEIKFIENPTNRQVTFSKRRNGIFKKAHELTLLCDAKVSLIIFSKSHKMHEYISPGLTTKKVIDQYQRTLGDIDLWRDHYEKMLENKKRLTDINNKLRRQIRQRIGEGMNNLDDLSFQQLRTLEDDMVSSTEKIRERKTWAKKKTISQKNISHGPPTLVHTKGAQVHDGLWHLNKAQTEKVRSLEQMNGNLLQELDSRTVALANGVSNFHAFNEEYNHLNRHQHVEEFDSYYLRLA* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3173 241 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Lja4g3173 241 Coils Coil 85 105 - -
Lja4g3173 241 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lja4g3173 241 Coils Coil 179 199 - -
Lja4g3173 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 241 - -
Lja4g3173 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja4g3173 241 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 241 - -
Lja4g3173 241 Pfam K-box region 83 153 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g3173 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja4g3173 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja4g3173 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja4g3173 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja4g3173 241 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lja4g3173 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja4g3173 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja4g3173 241 ProSiteProfiles K-box domain profile. 85 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3173 Lja-Chr4 59970314 59974671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3173 1 175 MADS-box Gene Family AT3G54340 51.366 2.81e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja4g3173 K-box 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3173 K09264 - gmx:100784496 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3173 4 59970314 59974671 Lja4g3173 4 59970314 59974671 ECH
Lja2g0517 2 4658310 4660325 Lja4g3173 4 59970314 59974671 ECH