Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3170 ATGGTCCATGCTCCGACCCATATTCCGGCCACGGGAACCCAGGACATGACACAGGAGGCAGCCGCAATCAATGTCCAGACGTCTGGTTTGGAAAGTCCTAGCAATCAGGAGAAATCTGTGGAAGACATGGAATCCGTTGGCGTCATTAATGGGGCAGCTACAAATCAGGAAGAGGGAGAATGTGTGGCTAAGGAGGATACTAATTTAAATAAGGAGATAATTAAGGAGGAAGTAGTGGAGGTATTTGGGGACTGGATGACGGTTAGAAAAAGGAGGCCCAAGTCAACGAATGTAATGGGGAGGAAATCGGGGGGCCCACAAACTGCTAAAGGTAATCCAGACAAGCCAATGATTGGCAGCAAAGGTAACACTAAATCTACGGAGCATAGGGCCTCTAACGTGGCTGGGCCCCATAAACACCTGAAGATTCCACCCTTTAGTCCACCATCTGCCACGGGATTTAGTGCTGGCCTAGGGAATGAGGACAGTACCACAAAAAAGAGACGTGCACGAGGAGATTGGGAAAAAACCCTAAACATCATGAAATCCAAAGAGCAAAAGGTGGGCCCGGTCGCAACAACGCACCCACCCAAAATTCCTGAACCCCCTCAACAGCCCATCGTGTTTGGGCTTGAGTGCGAAGTTGATTGTCAAGAACTGGTCACGGCTATTGAGAATGGTGAGTTGGATCGTTTTGTTCCAGAAATTGGTTGTCCTGAAATGGCGGAAATTAATGAAGAGTCTCGTGCGAACTTGTCTAATTTTGATGGCATGAATGAGTCTGAGGATCTGGATGATAACTCAGGTAATTCTGATGAAGATGATGTGGTCAATAATGAGGAGGGCCAGCAACAGTGCAAGTTAGTTCCCGAGTTGAGTATTGATGAAATTAGGGAGCTAGAGTTTTTGTCTGAGCAGGATGCCATTGAGTTTTACCAGCACTATGCCCAGTTTAAAGGTTTTGGGGTTAGGAAGGATGATGTTCGGCGCGATGCAAAGGGTAATGTTATTAGTCGCCAGCTTGTTTGTAATAGGGAGGGTGATAGACATGAAAAGCATTTGAAAAAGGTTAGTCGAGTGAAAGAGGCTAAGCCAATTACCAGAGTATCATGCCAGGCTAAATTTCGTGGAATTGACGAATGGTGA 1146 0.4651 MVHAPTHIPATGTQDMTQEAAAINVQTSGLESPSNQEKSVEDMESVGVINGAATNQEEGECVAKEDTNLNKEIIKEEVVEVFGDWMTVRKRRPKSTNVMGRKSGGPQTAKGNPDKPMIGSKGNTKSTEHRASNVAGPHKHLKIPPFSPPSATGFSAGLGNEDSTTKKRRARGDWEKTLNIMKSKEQKVGPVATTHPPKIPEPPQQPIVFGLECEVDCQELVTAIENGELDRFVPEIGCPEMAEINEESRANLSNFDGMNESEDLDDNSGNSDEDDVVNNEEGQQQCKLVPELSIDEIRELEFLSEQDAIEFYQHYAQFKGFGVRKDDVRRDAKGNVISRQLVCNREGDRHEKHLKKVSRVKEAKPITRVSCQAKFRGIDEW* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3170 381 MobiDBLite consensus disorder prediction 92 170 - -
Lja4g3170 381 MobiDBLite consensus disorder prediction 253 282 - -
Lja4g3170 381 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 248 373 - -
Lja4g3170 381 MobiDBLite consensus disorder prediction 259 279 - -
Lja4g3170 381 Pfam FAR1 DNA-binding domain 310 375 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3170 Lja-Chr4 59921376 59931642 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja4g3170 FAR1 1.8e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3170 - - lja:Lj4g3v0119630.1 150.984