Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3169 ATGAAGAACTTTTGGGAAACAATGAAACCAGCGGTTGTAATGGTGGCGGTTCAGATCGTATTTTCTGCTTGCAATGTAATCTACAAACTTGCCATAAATGATGGGATGAGCACTATTGTCATTTCAGCTTATCGAATGGCCTTTGCAGCGGCTACCACTATTCCTATTGCTCTTATTTTTGAAAGGAAGAGGCCGAAGATGTCTTGGAGGGTTATTTTCATGACATTTCTAAGTGGAACATTTGGGGGAACTTTATTTCAGAACCTATTCTACGGGGCCCTGGTTTTGGCATCAGCAACACTTGTCTCCGCCATTTACAACCTTATTCCTTCCATCACCTTCATCTTAGCTGTATTCTGCGGTTTCGAAAAATTAAATTGGGGACGAGTATCAGGAAAGGCCAAGGTTGTAGGAACTTTGCTTGGACTCGCTGGGGCATTGCTGCTGACATTTTACAAAGGAGTAGAATTTGATATTTGGCCTTTTTCTATCAACCTTTTGGATCCACACAAGAACCACCAAACTGATGCTAATGTGGCTGCTGATACCAGTAGAGAATTGTTGGGTGTTCTCTGTGTTGTGATTAGCTGCTTCAGTTTCTCTCTCTGGCTCATCATTCAGGCTAAGACCATGGAAGTGTACCCATGTCCTCAGACAAGCATAGCTTTGATGTCTATAATGGGAACAATACAATGCGTTGTTTTTGGTTTCATTGTTGAGAGGGACTTAAACCAATGGAAATTGGGTTGGGATATTAGGCTCATAACCGTGGCTTTTTCAGGAATTTTAGCCTCAGGAGTAATGATTCTTGTCATTGCATGGGTTGTACAGATGAAAGGCCCTTTGTTTGCGTCTGCTTTCAACCCTCTAATGCTTTTGATTGTTGCTTTTGTCGCTTCTATGGTGTTGGATGAGAAGTTAAATTTAGGCAGTGTGCTTGGAGGAGTGCTTATTATTTGTGGCCTATACACGGTGCTTTGGGGTAAGGGCAAAGAAGCTCAAAAGAAGAGTGATAACATAGAGCCGCAAGAAATCATGGAAGATTATGAACCTACCAGGCCGCTACTAAGTCCATGA 1077 0.4225 MKNFWETMKPAVVMVAVQIVFSACNVIYKLAINDGMSTIVISAYRMAFAAATTIPIALIFERKRPKMSWRVIFMTFLSGTFGGTLFQNLFYGALVLASATLVSAIYNLIPSITFILAVFCGFEKLNWGRVSGKAKVVGTLLGLAGALLLTFYKGVEFDIWPFSINLLDPHKNHQTDANVAADTSRELLGVLCVVISCFSFSLWLIIQAKTMEVYPCPQTSIALMSIMGTIQCVVFGFIVERDLNQWKLGWDIRLITVAFSGILASGVMILVIAWVVQMKGPLFASAFNPLMLLIVAFVASMVLDEKLNLGSVLGGVLIICGLYTVLWGKGKEAQKKSDNIEPQEIMEDYEPTRPLLSP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3169 358 Pfam EamA-like transporter family 188 326 IPR000620 GO:0016020|GO:0016021
Lja4g3169 358 Pfam EamA-like transporter family 12 150 IPR000620 GO:0016020|GO:0016021
Lja4g3169 358 PANTHER WAT1-RELATED PROTEIN 10 347 - -
Lja4g3169 358 MobiDBLite consensus disorder prediction 337 358 - -
Lja4g3169 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 153 - -
Lja4g3169 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 331 - -
Lja4g3169 358 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Lja4g3169 358 PANTHER WAT1-RELATED PROTEIN 10 347 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3169 Lja-Chr4 59909847 59918882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3169 8 350 Nodulin-like Gene Family AT1G25270 38.905 1.04e-80 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3169 - - mtr:MTR_4g094340 536.569