Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3167 ATGGAGTGTGTGGAAGCAGCGTTGAAGAGCAGTTTTAGGAAAGACACAGCCCTGAAACTCAGCTCCCAAACGTTCCTAGAAGAGTTGTCAGCGTTCAATGTTCAGAATGTCGTCACCTCTTGTGACGACTTCGTTGTTGATGACCTCCTTGATTTTTCGCACGAAGAAGAGCTTTTTGAAGAAGAACCAGAACAACACCACCATGGCTCTGTTTCCGAGAAACAGAACGAAACCCAAGAAATTTGCAACCCTTCTTCGTTCAACGACCAGTTTCCCTCTTTACCCACCAGCGAACTCAGTGTTCCGGATGATGATGCTGCGAACTTGGAATGGTTGTCTCATTTTGTTGAGGAATCCTTCTCGGAACACACTGTTTCCTTGCCCACCGGAGTTTCAACGGAGAGCGGCGGAGAGAAAGAGGCTGAACCGGGAAGCCAGGTTCGACCCTGTTTCAGAACCCCGGTTCCGGCGAAGGCGAGAAGCAAGCGAACCAGGACCGGTGTACGGGTCTGGCCGGTCGTGTCGCCTTCTTTCCCGGAGTTATCTTCTTCAACCTCGAGCTCCACCACCACCACCACCACCGCAACACCATGTTCTCCGTCGCTCTCCTCGCCCTCAAGCCCGGTGTTTGTTTGCCCTGCTGTGAGTTTTGAAAGAGGTTGGTTGCCGCCAGAGAAGAAGGCGAAGGTGAGGCCGGCCACGGAGGCGCTGCCGCCGCGGAGGTGCAGCCATTGCGGGGTTCAGAAGACCCCTCAGTGGCGAACCGGACCGCTCGGGGCAAAGACACTCTGCAACGCTTGTGGTGTCCGGTTCAAGTCGGGCCGGTTATTGCCCGAGTACAGACCGGCTTGCAGCCCTACTTTCTCGAGCCAATTGCACTCGAACCACCACCGAAAGGTGCTTGAGATGCGGCGGAAGAAGGAGGAGGTCATGGGTGAACCGGTGACCGGTTCAGGACTTCCTCCGGTTGACCCCGGTTTTTGA 984 0.5528 MECVEAALKSSFRKDTALKLSSQTFLEELSAFNVQNVVTSCDDFVVDDLLDFSHEEELFEEEPEQHHHGSVSEKQNETQEICNPSSFNDQFPSLPTSELSVPDDDAANLEWLSHFVEESFSEHTVSLPTGVSTESGGEKEAEPGSQVRPCFRTPVPAKARSKRTRTGVRVWPVVSPSFPELSSSTSSSTTTTTTATPCSPSLSSPSSPVFVCPAVSFERGWLPPEKKAKVRPATEALPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSQLHSNHHRKVLEMRRKKEEVMGEPVTGSGLPPVDPGF* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3167 327 PIRSF Txn_fac_GATA_plant 16 319 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lja4g3167 327 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 238 298 - -
Lja4g3167 327 MobiDBLite consensus disorder prediction 58 102 - -
Lja4g3167 327 PANTHER GATA TRANSCRIPTION FACTOR 1 315 - -
Lja4g3167 327 ProSitePatterns GATA-type zinc finger domain. 242 267 IPR000679 GO:0006355|GO:0043565
Lja4g3167 327 ProSiteProfiles GATA-type zinc finger domain profile. 236 272 IPR000679 GO:0006355|GO:0043565
Lja4g3167 327 MobiDBLite consensus disorder prediction 123 164 - -
Lja4g3167 327 PANTHER GATA TRANSCRIPTION FACTOR 1 315 - -
Lja4g3167 327 CDD ZnF_GATA 241 289 IPR000679 GO:0006355|GO:0043565
Lja4g3167 327 Pfam GATA zinc finger 242 276 IPR000679 GO:0006355|GO:0043565
Lja4g3167 327 MobiDBLite consensus disorder prediction 177 200 - -
Lja4g3167 327 MobiDBLite consensus disorder prediction 307 327 - -
Lja4g3167 327 MobiDBLite consensus disorder prediction 59 74 - -
Lja4g3167 327 Gene3D - 234 309 IPR013088 GO:0006355|GO:0008270
Lja4g3167 327 SMART GATA_3 236 290 IPR000679 GO:0006355|GO:0043565
Lja4g3167 327 MobiDBLite consensus disorder prediction 75 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3167 Lja-Chr4 59861026 59862703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3167 5 308 C2C2-Gata Transcription Factor Family AT5G66320 51.852 3.78e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja4g3167 GATA 4.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3167 - - tcc:18610821 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0519 2 4674399 4675939 Lja4g3167 4 59861026 59862703 ECH
Lja4g3167 4 59861026 59862703 Lja4g3167 4 59861026 59862703 ECH
Lja2g0519 2 4674399 4675939 Lja4g3167 4 59861026 59862703 PCT