Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3160 ATGCGAACTCTTTGTGACGCTTGTGAGAGCGCCGCTGCTATTGTTTTTTGCGCTGCGGATGAGGCTGCGCTATGCAGTGCCTGTGATGAGAAGGTTCACATGTGTAATAAGCTAGCTAGCCGGCATGTAAGGGTTAGTCTTGCAAGTCCAAGTGATGTTCCTCGCTGTGACATTTGTGAGAATGCACCTGCCTTCTTCTATTGCGAGACAGATGGAACTTCCCTTTGTTTGCAGTGTGATATCATTGTTCATGTTGGAGGTAAAAGAACACATGGAAGATACCTTCTTTTTAGGCAAAGAATTGAGTTTCCAGGAGATAAACCTGGTCATGCAGAAAGCCCAGTTTCACATCCTTTGAATCCAGGTGGGACTAAGAGAGGAGCAAATCCACTACCCCAAATGAAATTGGGAGAAATACAACAAAATCACAGGATGGTTCCATCATCAGAAGCTGATGCAATGAGGGAAACCAAAATGATTGACTTGAACATGAAGCCTCACAAAATTGACGAACAAACATCAAATAATCAGATGAAACCCCCCAAGAACCACCGCAGTCCACAAAGGAACGAGAGTGAGGAACAGCGATGGGGTTGA 597 0.4489 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICENAPAFFYCETDGTSLCLQCDIIVHVGGKRTHGRYLLFRQRIEFPGDKPGHAESPVSHPLNPGGTKRGANPLPQMKLGEIQQNHRMVPSSEADAMRETKMIDLNMKPHKIDEQTSNNQMKPPKNHRSPQRNESEEQRWG* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3160 198 MobiDBLite consensus disorder prediction 169 183 - -
Lja4g3160 198 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 177 - -
Lja4g3160 198 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 177 - -
Lja4g3160 198 SMART bboxneu5 51 96 IPR000315 GO:0008270
Lja4g3160 198 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lja4g3160 198 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Lja4g3160 198 CDD Bbox1_BBX-like 4 47 - -
Lja4g3160 198 Gene3D Classic Zinc Finger 2 91 - -
Lja4g3160 198 MobiDBLite consensus disorder prediction 184 198 - -
Lja4g3160 198 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Lja4g3160 198 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270
Lja4g3160 198 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Lja4g3160 198 CDD Bbox1_BBX-like 56 96 - -
Lja4g3160 198 MobiDBLite consensus disorder prediction 162 198 - -
Lja4g3160 198 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lja4g3160 198 MobiDBLite consensus disorder prediction 105 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3160 Lja-Chr4 59731619 59734093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3160 1 177 C2C2-CO-like Transcription Factor Family AT4G38960 60.894 3.93e-71 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lja4g3160 zf-B_box 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3160 - - gmx:100780544 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0528 2 4767128 4770807 Lja4g3160 4 59731619 59734093 ECH
Lja4g3160 4 59731619 59734093 Lja4g3160 4 59731619 59734093 ECH
Lja1g2328 1 26973512 26974831 Lja4g3160 4 59731619 59734093 ECH
Lja2g0528 2 4767128 4770807 Lja4g3160 4 59731619 59734093 PCT