Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3155 ATGAGGACCCGAAATGCCGATTCGGCTTCCAAATCCGCAACCCCTAAGAGGACACCGCCGCCGAGGAAAGCCGCCGCTAAAGCCACCGTTGAATCTCCCGCGGCCAAGCGAACGCCTCCTGCATCCAGAACAAGAAGCGCTAAGAAGACGGAGGCATCGCCCACACCGGACCCTGTATCCGATTCCAATCCGAATCAAACTCGTCCGGAGAAGAAGGTGTTAGCCAGTGCTAGCACGACAAAATCTGCGAAGAAGAAGGCGGCACCAAGGAGGTCGAGAGCTAAAGCGGTTGCCACTCCGAATTTGGGAGAGGAGTTGGAGGCAGAAGCTGGAGAAACTTCAGTTGTAGGTAATGTTGAGGCAGAAGCTGATGTAACTCCAGTAGTGGATAATGCTGAGGCAGCAGAGGGGGGACAAGGTCTTGGGTCTGTTGAGTTATCTGATGAGAAGGGGCAGAAGTCCATGGAAGTGGATGAGCCTTTTCTTGAAAAAGATGGTGAATTGGCTGAAATGGGAAGGAGCGTGATGGAAGTTGACATAGCTGCGTCTGGTGATGCTTCTGTTGATTTTAAGCAACCTGAGCATGCTATTGTGGACCTCAATATATCTACGGTGGATAATGAAGATTCGACTGGTGTAAAGGAGGTAGAGGAAGAGTTGAAAGTACAGGAGAGAGAGGAAGGAAAGAACGAATTGGAACAACAGAAAGGAGAGGAAGAGTTGAAAGAACATGGAGGGGAGAGAGGAGAGGAAGAGTTGAAAGAACAGGAAGGGGAGAGAGGAGAGGAAGAGTTGAAAGAACAGGGAGGGGTGAGAGGAGAGGAAGAGTTGAAAGAACAGGAAGGAGAGAGAGGAGAGGATGGGTTGAAAGAGCTGGAAGGAGAAAAAGGAGAGGAAGAAATGAAAGAGCAGGAAGGAGAGAGAGGAGAGGATGGGTTGAAAGAGCTGGAAGGAGAAAAAGGAGAGGAAGAAATGAAAGAACAGGAAGGAGAGAGAGGAGAGGATGGGTTGAAAGAGCTGGAAGGAGAAAAAGGAGAGGAAGAAATGAAAGAACAGGAAGGAGAGAAAGGAGAGGATGGGTTGAAAGAGCTGGAAGGAGAAAAAGGAGGGGAAGAGTTGAAAGAACCGGAAGCTGAGAAAAGAGAGGAAGGGTTGAAAAAGCTGGAAGGAGAGAAAGGAGGGGAAGAGTTGAAAGGACAGGAAGGAGAGGAAGAGTTGAAAGAAGAGGAGCATGAGAAATCAAAGGTAGAGGAAACTCACATTTTCGGACAGGAAGAGCACTCTAACGCTGACTCTAAAGTAGAAGTAAAAGTCCAGTTGCAAAAAGATGTTATTTCTGAAAATTACGGTGGTGAAGGGCCAAAAAGTGGTGAAATGTTAGATAGTGGAGAACAAGGGACGGAGGAGCCTATTGAGGAAGATCCAGAGGAAGATCCGGAGGAAGACCCAGAAGAAACTGAGACATTGGAGGGGCATATGCAATTGGAAGCACTTGCAAAGCAGCGAAAAATTAAGAAAGAACATGAGATATTTGTTGGTGGACTGGATCGCGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAAAGGATTGGGGAGGTAGTTGAAGTCAGGTTGCATAAAAATTCTTCGACAAATAAAAATAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCCAAAAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGAAAACGATGTGGCATTGCGCCTAGTGAGGACAATGCCACATTATTCTTGGGAAATATTTGCAATACTTGGACAAAGGAAGCTATTAAACAGAAGTTGATGGATTATGGTATTGAAGGGGTTGAAAATATCACCCTCGTCTCAGATGTTCAACAAGAAGGCTTGAGCCGGGGCTTTGCATTCCTGGAGTTCTCTTGTCATGCTGATGCGATGAATGCATACAAGAGGCTTCAAAAGCCTGATGTCATCTTTGGACATGCCGAGAGAACTGCCAAGGTAGCCTTTGCTGAACCAGTACGTGAACCAGATCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCTCACTGGGAGGAAGATCAAGTGAGGGAGCTGTGTAAATCGTATGGTGAAATTGTAAGAATTGTTTTAGCACGGAGTATGTCTACAGCCAAGAGGAAGGATTATGGATTTATTGATTTTTCTACACATGAAGCGGCTGTAGCTTGTGTTGATGGTGTAAATAAATCCGAATTGGGTGATGGGGCCTCAAAGATAAAATTGAGAGCTAGGCTTTCAAATCCTTTGCCTAAAACACAGGCTGTGAAGGGTGGCATGTGTGGTGGCTTCCGAATCGGCCATGCTAGGAGTGGAGCCTTTCCAAGATCTGGAAGAGGTTTTGGCCGCGGGAGACAGCCCTTCAGCAACCGGGGAAATTTCAATAGGAACAGGAGTTTTTATCATACTGGACACAGTCATAGTGGACGAGTGGGTTCTCGGAGTGACCTTGATTTTAATATGTATCCAGATTTCCGTCAGAGGCAATTTGGTCCACAAGCTGAAGCTATGATGGGTGGTCATTATGCTGCTAGCCGAGGTGCTGCATTTGCTGGTCCATCTAGACATTATCAAGATAGAGCATGGTATGGTATGGCTGATGGAGGCCCTAGTGAGCCTATTCCTTCTAGAAGGCCCTATTCCCCAGGTGGACAGTTTGACACACCTTTTATGGGAAGACGTTTTGATGATCCATATCTATATGATGACAATATGCATGGGATGAAACGTCCATTTTATATGACGGACCCTGAGCCTGATTACATGGGGCCTAATATGGTCCGCCCCCGGTTGGATTATGCTGATCCGTCTGTACTTCATGGAACTCGTTATCATGATTCTTTTGGGGCCAGCAGCAGACAGTACCCACCACAAGACTATTACGGTTCTGATTATGGTAGTGGTCGATACTCATCTTTTTATCAGAGTGATGGCTCACGTGGGCGTGGGCATGGGCATGGGCATGGATACTACTGA 3033 0.4649 MRTRNADSASKSATPKRTPPPRKAAAKATVESPAAKRTPPASRTRSAKKTEASPTPDPVSDSNPNQTRPEKKVLASASTTKSAKKKAAPRRSRAKAVATPNLGEELEAEAGETSVVGNVEAEADVTPVVDNAEAAEGGQGLGSVELSDEKGQKSMEVDEPFLEKDGELAEMGRSVMEVDIAASGDASVDFKQPEHAIVDLNISTVDNEDSTGVKEVEEELKVQEREEGKNELEQQKGEEELKEHGGERGEEELKEQEGERGEEELKEQGGVRGEEELKEQEGERGEDGLKELEGEKGEEEMKEQEGERGEDGLKELEGEKGEEEMKEQEGERGEDGLKELEGEKGEEEMKEQEGEKGEDGLKELEGEKGGEELKEPEAEKREEGLKKLEGEKGGEELKGQEGEEELKEEEHEKSKVEETHIFGQEEHSNADSKVEVKVQLQKDVISENYGGEGPKSGEMLDSGEQGTEEPIEEDPEEDPEEDPEETETLEGHMQLEALAKQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIHGKRCGIAPSEDNATLFLGNICNTWTKEAIKQKLMDYGIEGVENITLVSDVQQEGLSRGFAFLEFSCHADAMNAYKRLQKPDVIFGHAERTAKVAFAEPVREPDPEIMAQVKSVFINGLPPHWEEDQVRELCKSYGEIVRIVLARSMSTAKRKDYGFIDFSTHEAAVACVDGVNKSELGDGASKIKLRARLSNPLPKTQAVKGGMCGGFRIGHARSGAFPRSGRGFGRGRQPFSNRGNFNRNRSFYHTGHSHSGRVGSRSDLDFNMYPDFRQRQFGPQAEAMMGGHYAASRGAAFAGPSRHYQDRAWYGMADGGPSEPIPSRRPYSPGGQFDTPFMGRRFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNMVRPRLDYADPSVLHGTRYHDSFGASSRQYPPQDYYGSDYGSGRYSSFYQSDGSRGRGHGHGHGYY* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3155 1010 Coils Coil 399 419 - -
Lja4g3155 1010 MobiDBLite consensus disorder prediction 149 163 - -
Lja4g3155 1010 Gene3D - 454 587 IPR012677 -
Lja4g3155 1010 PANTHER NUCLEOLIN-LIKE ISOFORM X1 395 999 - -
Lja4g3155 1010 Gene3D - 588 672 IPR012677 -
Lja4g3155 1010 CDD RRM_SF 510 581 - -
Lja4g3155 1010 Coils Coil 213 242 - -
Lja4g3155 1010 MobiDBLite consensus disorder prediction 210 440 - -
Lja4g3155 1010 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 688 754 IPR000504 GO:0003723
Lja4g3155 1010 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 510 578 IPR000504 GO:0003723
Lja4g3155 1010 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 590 658 IPR000504 GO:0003723
Lja4g3155 1010 MobiDBLite consensus disorder prediction 794 815 - -
Lja4g3155 1010 MobiDBLite consensus disorder prediction 201 489 - -
Lja4g3155 1010 Gene3D - 674 828 IPR012677 -
Lja4g3155 1010 MobiDBLite consensus disorder prediction 465 487 - -
Lja4g3155 1010 SUPERFAMILY RNA-binding domain, RBD 509 653 IPR035979 GO:0003676
Lja4g3155 1010 MobiDBLite consensus disorder prediction 45 83 - -
Lja4g3155 1010 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 508 586 IPR000504 GO:0003723
Lja4g3155 1010 MobiDBLite consensus disorder prediction 1 163 - -
Lja4g3155 1010 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 588 673 IPR000504 GO:0003723
Lja4g3155 1010 MobiDBLite consensus disorder prediction 888 907 - -
Lja4g3155 1010 SUPERFAMILY RNA-binding domain, RBD 677 791 IPR035979 GO:0003676
Lja4g3155 1010 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 686 768 IPR000504 GO:0003723
Lja4g3155 1010 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 395 999 - -
Lja4g3155 1010 SMART rrm1_1 687 760 IPR000504 GO:0003723
Lja4g3155 1010 SMART rrm1_1 509 582 IPR000504 GO:0003723
Lja4g3155 1010 SMART rrm1_1 589 666 IPR000504 GO:0003723
Lja4g3155 1010 CDD RRM_SF 688 762 - -
Lja4g3155 1010 CDD RRM_SF 590 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3155 Lja-Chr4 59655557 59663568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3155 510 754 Eukaryotic Initiation Factors Gene Family AT2G23350 23.810 4.99e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3155 - - gmx:100784338 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3155 4 59655557 59663568 Lja4g3155 4 59655557 59663568 ECH