Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3153 ATGATAGCCCTTCACAAATTGGCTGGAAATCGCAAGGCGTTTGCTATTAGTCCTCATTGGTTTGTTAGAGCCGGTGAAGCAAGTGAGGAGAAAGATACTGAGAAGCTGAGAGAATTGAGAGTGATTGAAGCACATTATCCTCGTCCTTCTTCCATTCCACCAAGCCCTTTGGTTTCTTCGGATGTGGAAGAGGAAGATTATGATGATACCGCTACTCCTATAGTCTCACTCATTCCTATTGAGGAGACTGAGGATTATGATGATGATAACGCTTCTTCTGATATCGTCCCTCTCATTCCTATTGATGTCCAGGAGGAAGTGGCTATGGATATTTCGCCCGAACGCACAGTGTTAAATGCTCCCTCTGATATGCATTCACAGAAATTGCAGCGACAACATCTATCAGCAACAACAACTCCTCTTAGTTCCGGTTGTAACCCCTCCTCTTCTACTGTTTCTTTAGATGATGGTGGTGTAACCGACTTATCTAGGGTGTCTGCACAAGACTTAGCAACAGTTGCTGCTCTAATAGAAGCAATATTAAAGATCAATCAACGTGGAAGCTCAATTGATGTGGATCTACTTATCAAAATATTTAATAACCCCCAAATGGTTGAGAGATTGAGTACTGAAAATAGAATTCCACCACCCAATTTAAGAACTGATTCATCTTCAAACAATCCTCTGAGCATATCCACTTTTGGATTAAATCCTACTTTTCCATCAATTCCACTAATGCCATTGTCTACATCTCCACCTTGTGGTGTGGCAGCTTATTCTGGGACTACTCCACTAACAGGTGTTGCGAGTTTATTACCTTCTCCTGTGGTGATGCCTTCAGCTCCATCATTTACAATATTGAATCCTGCACCTAATAATCTGACAGCTCAGATCCCGGCTGCGATTTCATCATATTCAATGGCGAATTTCATGCATGATTCTTACCAGACGACAACTGATGCATCTACTCCATTGTCTTGGCCTGTGTGTGCACCAAATACTGCTGATCCTCAAATGCAGTTGTCTTGGCCTGCGTACACACCGTTCAAGCCTGCAACGGTTGTTAGTGAAAACATTCACAAGTCAAATGGAGTGCCTACTACAGTTTCCTTGAACATTCCTCCTCAGCAAGATATAGTTCAAGCATCATCATTATCCTCAGGGATTAAGCGAGCTGCATCATTCTCCATTTCTTCCAATGGACAAAGCTCGGTTCAATTCTCTTCCACAACCGAGAAGTACCTGAATACTTTTGGGACTCAAACCACTGCTAGAACAACAACCAAACTACATGCTTCTCAATCTAATACAAGTTCTTCAGGAAGTGCTGCTGCAAGGGATGATGGGGACTATTATAAGAACCTAGTTAGGAGACGTGATGAAGCTAGGCAAGTTAAGCAGGATAGTAGGAGCTCCTTCCGAGAGTCAAAATCAGCGGCACAAGACATTAGACACCAAGAACCAGAGAGACACAGAAGCGAGAAAGCTGCATGCATATACTATAACAGCCCAAGGGGGTGCAGAAATGGTGCCCAATGCCGCTTTCGACATCATGTTTCAAGTCGGAGGGATGCTGATAACAACGTCCGAGGGAGTAGTTATCTCAAAAAATTGAGACTATAG 1623 0.4313 MIALHKLAGNRKAFAISPHWFVRAGEASEEKDTEKLRELRVIEAHYPRPSSIPPSPLVSSDVEEEDYDDTATPIVSLIPIEETEDYDDDNASSDIVPLIPIDVQEEVAMDISPERTVLNAPSDMHSQKLQRQHLSATTTPLSSGCNPSSSTVSLDDGGVTDLSRVSAQDLATVAALIEAILKINQRGSSIDVDLLIKIFNNPQMVERLSTENRIPPPNLRTDSSSNNPLSISTFGLNPTFPSIPLMPLSTSPPCGVAAYSGTTPLTGVASLLPSPVVMPSAPSFTILNPAPNNLTAQIPAAISSYSMANFMHDSYQTTTDASTPLSWPVCAPNTADPQMQLSWPAYTPFKPATVVSENIHKSNGVPTTVSLNIPPQQDIVQASSLSSGIKRAASFSISSNGQSSVQFSSTTEKYLNTFGTQTTARTTTKLHASQSNTSSSGSAAARDDGDYYKNLVRRRDEARQVKQDSRSSFRESKSAAQDIRHQEPERHRSEKAACIYYNSPRGCRNGAQCRFRHHVSSRRDADNNVRGSSYLKKLRL* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3153 540 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 14 536 - -
Lja4g3153 540 ProSiteProfiles Zinc finger C3H1-type profile. 492 520 IPR000571 GO:0046872
Lja4g3153 540 MobiDBLite consensus disorder prediction 450 492 - -
Lja4g3153 540 MobiDBLite consensus disorder prediction 426 444 - -
Lja4g3153 540 MobiDBLite consensus disorder prediction 426 492 - -
Lja4g3153 540 MobiDBLite consensus disorder prediction 519 540 - -
Lja4g3153 540 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 14 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3153 Lja-Chr4 59603245 59605204 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja4g3153 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3153 - - gmx:102661587 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0540 2 4868441 4873394 Lja4g3153 4 59603245 59605204 PCT