Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3144 ATGGCTGTTAGAAAATCAAGTAAGAAGCCACAAGCAGAAGTTATCAAGCAAATTCTGAGAAGGTGTTCAAGTTTTGGGAAGAAACAGGGCTACAATAATGAAGAGGGTCATCTTCCTGAAGATGTACCAAAAGGACACTTTCCAGTGTATGTTGGAGAAAACAGGACAAGATATATTGTCCCAATTTCATGGTTGGGTCACCCACAGTTTCAAAGCCTGCTCAGAAAAGCTGAAGAGGAGTTTGGTTTCAATCATGATATGGGCCTTACTATCCCATGTGATGAACTTGATTTTCAGTACCGTACCTCATTGATCAGATAA 321 0.4019 MAVRKSSKKPQAEVIKQILRRCSSFGKKQGYNNEEGHLPEDVPKGHFPVYVGENRTRYIVPISWLGHPQFQSLLRKAEEEFGFNHDMGLTIPCDELDFQYRTSLIR* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3144 106 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 106 IPR003676 GO:0009733
Lja4g3144 106 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 106 - -
Lja4g3144 106 Pfam Auxin responsive protein 27 104 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3144 Lja-Chr4 59485648 59485968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3144 39 106 Calmodulin-binding Proteins AT3G43120 50.000 5.06e-19 75.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0545 2 4903693 4904007 Lja4g3144 4 59485648 59485968 ECH
Lja1g3513 1 43828413 43829062 Lja4g3144 4 59485648 59485968 ECH
Lja4g3144 4 59485648 59485968 Lja4g3144 4 59485648 59485968 ECH
Lja1g2356 1 27265807 27266480 Lja4g3144 4 59485648 59485968 ECH