Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3137 ATGGGCTCCTGCTTTTCCACCAACACCGCCACTAAGCCGCAGCAGTCAACGGCGGCGCAGAAGAAACAACCGCCGCCCAACAGACATCAACGGCAGCGAGCCCAGCGGCACGTGGCTGGCTCCAGGCACGTGCCGTCCGGGATGCGCGCCGATTTCGGTTACGACAAGGACTTCGATGAGCGTTACTCGCTTGGGAAGTTGTTGGGACACGGTCAATTCGGTTATACCTATGTCGGAGTAGACAAAGCCAGTGGGGATCGTGTTGCGGTTAAGAGACTCGAGAAGAGTAAGATGGTTCTCCCTGCTGCTGTTGAGGATGTTAAGCAAGAGGTCAATATATTGAAAGCAGTTGCCGGTCACGAGAATGTGGTTCAGTTCTATAATGCTTTTGATGATGATTCATACGTTTACATAGTTATGGAGTTATGCGAGGGTGGAGAACTGCTGGATCGGATATTGGCCAAGAAGAACAGCCGTTACACTGAAAAAGATGCAGCTGTAGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGCCATTTACGTGGTTTAGTGCACCGAGACATGAAACCGGAGAATTTTCTTTTCAAATCAACCAGAGAAGATTCACCTTTAAAGGCTACAGATTTTGGTTTGTCAGATTTCATAAAGCCAGGAAAGAAGTTCCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTATTAAAGCGGAAATCAGGCCCTCAATCTGATGTGTGGAGTATCGGTGTTATTACATACATCTTGCTATGTGGGAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGTAACAAGCCTGATTTCCGCCGGAAACCGTGGCCGACTATAAGTAATGCTGCAAAGGATTTTGTCAAGAAATTGCTAATAAAGGATCCTAGGGCAAGATTAACTGCTGCTCAAGCTCTATCACATCCATGGGTTAGAGAAGGTGGAGAAGCATCGGAGATTCCTATTGATATATCTGTCCTGAACAACCTGCGGCAGTTTGTGACGTATAGTCGATTCAAACAATTTGCACTAAGGGCATTGGCTAGCATACTTAATGAAGAAGAGTTGGCTGATCTAAAAGATCAATTTGATGCAATAGATGTGGACAAAAATGGCTCGATTAGCCTGGAAGAGATGAGACAGGCTCTTGCTAAAGATCTTTCTTGGAAGTTGAAAGAATCACGTGTACTAGAGATATTGCAAGCAATTGACAGCAACACAGATGGGCTGGTGGATTTCACTGAGTTTGTTGCAGCTACATTACATGTGCATCAATTGGAGGAGCATGACTCTGATAAGTGGCAGCTACGGTCACAAGCTGCTTTTGAGAAATTTGACTTGGATAAAGATGGCTATATTACTCCAGAAGAACTTCGAATGCATACTGGCTTGAGAGGATCGATTGACCCTCTGCTTGAGGAAGCTGACATCGACAAAGATGGAAAAATCAGCCTATCGGAGTTTCGTAGACTTCTAAGAACTGCAAGCATGGGTTCTCAAACTGTGACAACCCCAACTGGCTATCAGCGGAGGAGCTAG 1572 0.458 MGSCFSTNTATKPQQSTAAQKKQPPPNRHQRQRAQRHVAGSRHVPSGMRADFGYDKDFDERYSLGKLLGHGQFGYTYVGVDKASGDRVAVKRLEKSKMVLPAAVEDVKQEVNILKAVAGHENVVQFYNAFDDDSYVYIVMELCEGGELLDRILAKKNSRYTEKDAAVVVRQMLKVAAECHLRGLVHRDMKPENFLFKSTREDSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPQSDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLIKDPRARLTAAQALSHPWVREGGEASEIPIDISVLNNLRQFVTYSRFKQFALRALASILNEEELADLKDQFDAIDVDKNGSISLEEMRQALAKDLSWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSDKWQLRSQAAFEKFDLDKDGYITPEELRMHTGLRGSIDPLLEEADIDKDGKISLSEFRRLLRTASMGSQTVTTPTGYQRRS* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3137 523 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Lja4g3137 523 ProSiteProfiles Protein kinase domain profile. 62 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3137 523 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 18 513 - -
Lja4g3137 523 ProSiteProfiles EF-hand calcium-binding domain profile. 482 509 IPR002048 GO:0005509
Lja4g3137 523 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Lja4g3137 523 CDD STKc_CAMK 61 321 - -
Lja4g3137 523 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Lja4g3137 523 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Lja4g3137 523 SMART serkin_6 62 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3137 523 Gene3D - 363 432 - -
Lja4g3137 523 MobiDBLite consensus disorder prediction 1 25 - -
Lja4g3137 523 SUPERFAMILY EF-hand 354 505 IPR011992 -
Lja4g3137 523 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Lja4g3137 523 Gene3D Phosphorylase Kinase; domain 1 55 147 - -
Lja4g3137 523 Pfam Protein kinase domain 62 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3137 523 Gene3D - 342 502 - -
Lja4g3137 523 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Lja4g3137 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Lja4g3137 523 Pfam EF-hand domain pair 451 503 IPR002048 GO:0005509
Lja4g3137 523 Pfam EF-hand domain pair 369 431 IPR002048 GO:0005509
Lja4g3137 523 MobiDBLite consensus disorder prediction 1 46 - -
Lja4g3137 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 513 - -
Lja4g3137 523 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Lja4g3137 523 SUPERFAMILY Protein kinase-like (PK-like) 59 334 IPR011009 -
Lja4g3137 523 Gene3D Transferase(Phosphotransferase) domain 1 148 341 - -
Lja4g3137 523 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Lja4g3137 523 SMART efh_1 369 397 IPR002048 GO:0005509
Lja4g3137 523 SMART efh_1 478 506 IPR002048 GO:0005509
Lja4g3137 523 SMART efh_1 448 476 IPR002048 GO:0005509
Lja4g3137 523 SMART efh_1 406 434 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3137 Lja-Chr4 59404625 59413579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3137 1 519 EF-hand Containing Proteins AT2G17890 78.095 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja4g3137 Pkinase 7.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3137 K13412 - gmx:100798941 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3137 4 59404625 59413579 Lja4g3137 4 59404625 59413579 ECH
Lja2g0555 2 5012019 5016713 Lja4g3137 4 59404625 59413579 PCT