Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3132 ATGCTCTCACCATCTTTCACCACCGCCACCACTTTCTCCGGCCAAATTGCAACTTCGCCGACAGGCCACGTCAGATCCCGGCCAGTACTCGCATTCGCCACCGCCACCGAAGCAGACTACCGACCTACACCTTCTTTGCATCTGAGCACCCACGGCGACAGCGGCATGGCTTCTTGCTCATCATCGCTCTACGAGATTCTCGGAATCGCCGCTGCCGCGTCAGACCAGGAGATCAAGGCGGCGTACCGGCGGCTTGCTAGAGTCCGTCACCCTAACGTGGCGGCGGTTGATCGGAAGGACTCGTCGGCGGACGAGTTCATGAAGATCCACGCTGCATACTCGACGTTATCTGATCCTGAGAAGCGTGCCAGCTATGATCGGAGTATGAACCGGCGGAGGCGGCCGCTGACGGCAGCGGTGACGTCGAGATTTTCCGGTTACAAAGGACGGAACTGGGAAACGGACCAGTGCTGGTAG 477 0.5933 MLSPSFTTATTFSGQIATSPTGHVRSRPVLAFATATEADYRPTPSLHLSTHGDSGMASCSSSLYEILGIAAAASDQEIKAAYRRLARVRHPNVAAVDRKDSSADEFMKIHAAYSTLSDPEKRASYDRSMNRRRRPLTAAVTSRFSGYKGRNWETDQCW* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3132 158 CDD DnaJ 64 118 IPR001623 -
Lja4g3132 158 ProSitePatterns Nt-dnaJ domain signature. 106 125 IPR018253 -
Lja4g3132 158 PANTHER - 8 158 - -
Lja4g3132 158 Pfam DnaJ domain 63 126 IPR001623 -
Lja4g3132 158 ProSiteProfiles dnaJ domain profile. 62 129 IPR001623 -
Lja4g3132 158 SMART dnaj_3 61 121 IPR001623 -
Lja4g3132 158 Gene3D DnaJ domain 53 145 IPR036869 -
Lja4g3132 158 SUPERFAMILY Chaperone J-domain 61 131 IPR036869 -
Lja4g3132 158 PRINTS DnaJ domain signature 101 121 IPR001623 -
Lja4g3132 158 PRINTS DnaJ domain signature 82 97 IPR001623 -
Lja4g3132 158 PRINTS DnaJ domain signature 64 82 IPR001623 -
Lja4g3132 158 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 8 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3132 Lja-Chr4 59331963 59332695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3132 56 126 C2H2 Transcription Factor Family AT1G74250 43.038 9.36e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3132 - - cam:101494220 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3132 4 59331963 59332695 Lja4g3132 4 59331963 59332695 ECH
Lja2g0556 2 5021903 5023063 Lja4g3132 4 59331963 59332695 ECH