Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3129 ATGGCGGAAGAGAGATTCAGCGGCGTCGTTCAGTGGTTCAACAATGTCAAGGGTTTCGGCTTCATCAAGCCCGATGACGGCGGAGAAGATCTCTTCGTCCACCAATCCTCCATCAGATCCGACGGCTACCGAACCCTCCTCGAAGGCGATCTCGTCGAGTTCTCCATCGCCACCGGCGACAACGACAAGACCAAAGCCGTCGATGTCACCGGCCCCAACGGCGCCGCTCTCCAGCCCACTCGCAAGGATTCCGCCCCGCGCGGATTCGGCGGATGGAGGGGCGGCGAGAGGCGTAACGGTGGAGGAGGCGGCGGCGGCGGTGGTGGTTGCTACAACTGTGGCGACACTGGGCATCTGGCTAGGGATTGCCACCGGAGCAATAACAACGGTGGAGGCGGAGGCGGCGCTGCGTGCTACAACTGCGGTGATGCTGGCCATCTGGCTAGGGATTGCAACCGGAGCAACAACAACTCCGGCGGAGGCGGCGCTGGATGCTACAACTGTGGCGACACTGGGCATCTGGCCAGGGACTGCAACCGGAGCAACAACAGCGGCGGAGGTGGAGGCGGAGGCGGCGCGTGTTACACTTGCGGTGGGTTTGGGCATCTGGCTAGGGACTGCATGCGCGGAGGCAATGGTGGCGGCGGTGGTCCAGGAAGCGCGTCTTGCTTCAGATGCGGTGGGATCGGGCACATGGCGAGGGACTGCGCAACCGCGAAGGGTCCGAGCAGCGGTGGAGTCGGCGGCGGAGGTTGCTTTCGATGCGGGGAGGTTGGTCACTTGGCTAGGGATTGTGATGGTGGCGTTGCTGTCAGTGGTGGTGGTGGGAATGCTGGGAGAAACACATGCTTCAATTGTGGGAAGCCTGGGCATTTTGCTAGGGAATGCATTGAAGCCTCTGGGTGA 906 0.6247 MAEERFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGDNDKTKAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFARECIEASG* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3129 301 SMART csp_8 7 72 IPR011129 GO:0003676
Lja4g3129 301 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lja4g3129 301 ProSiteProfiles Zinc finger CCHC-type profile. 110 123 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 SUPERFAMILY Retrovirus zinc finger-like domains 273 297 IPR036875 GO:0003676|GO:0008270
Lja4g3129 301 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lja4g3129 301 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lja4g3129 301 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lja4g3129 301 ProSiteProfiles Zinc finger CCHC-type profile. 138 151 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 Gene3D - 1 83 IPR012340 -
Lja4g3129 301 SUPERFAMILY Nucleic acid-binding proteins 4 73 IPR012340 -
Lja4g3129 301 SUPERFAMILY Retrovirus zinc finger-like domains 241 266 IPR036875 GO:0003676|GO:0008270
Lja4g3129 301 MobiDBLite consensus disorder prediction 65 100 - -
Lja4g3129 301 SUPERFAMILY Retrovirus zinc finger-like domains 185 239 IPR036875 GO:0003676|GO:0008270
Lja4g3129 301 Gene3D - 105 133 - -
Lja4g3129 301 Gene3D - 274 301 - -
Lja4g3129 301 Gene3D - 162 187 - -
Lja4g3129 301 Gene3D - 247 268 - -
Lja4g3129 301 Gene3D - 134 161 - -
Lja4g3129 301 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Lja4g3129 301 ProSiteProfiles Zinc finger CCHC-type profile. 223 236 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lja4g3129 301 PANTHER COLD SHOCK PROTEIN 1-LIKE 98 153 - -
Lja4g3129 301 PANTHER COLD SHOCK PROTEIN 1-LIKE 129 238 - -
Lja4g3129 301 PANTHER COLD SHOCK PROTEIN 1-LIKE 4 101 - -
Lja4g3129 301 PANTHER COLD SHOCK PROTEIN 1-LIKE 183 298 - -
Lja4g3129 301 PANTHER COLD SHOCK PROTEIN 1-LIKE 157 266 - -
Lja4g3129 301 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lja4g3129 301 ProSiteProfiles Zinc finger CCHC-type profile. 283 296 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 SMART c2hcfinal6 193 209 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 SMART c2hcfinal6 251 267 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 SMART c2hcfinal6 137 153 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 SMART c2hcfinal6 282 298 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 SMART c2hcfinal6 109 125 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 SMART c2hcfinal6 222 238 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 Pfam Zinc knuckle 193 208 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 Pfam Zinc knuckle 223 237 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 Pfam Zinc knuckle 109 123 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 Pfam Zinc knuckle 281 296 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 Pfam Zinc knuckle 251 266 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 Pfam Zinc knuckle 164 178 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 Pfam Zinc knuckle 137 151 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 ProSiteProfiles Zinc finger CCHC-type profile. 194 207 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 ProSiteProfiles Zinc finger CCHC-type profile. 165 178 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 SUPERFAMILY Retrovirus zinc finger-like domains 127 181 IPR036875 GO:0003676|GO:0008270
Lja4g3129 301 SUPERFAMILY Retrovirus zinc finger-like domains 93 125 IPR036875 GO:0003676|GO:0008270
Lja4g3129 301 Gene3D - 188 246 - -
Lja4g3129 301 ProSiteProfiles Zinc finger CCHC-type profile. 252 265 IPR001878 GO:0003676|GO:0008270
Lja4g3129 301 PANTHER COLD SHOCK DOMAIN PROTEIN 2 98 153 - -
Lja4g3129 301 PANTHER COLD SHOCK DOMAIN PROTEIN 2 129 238 - -
Lja4g3129 301 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 101 - -
Lja4g3129 301 PANTHER COLD SHOCK DOMAIN PROTEIN 2 183 298 - -
Lja4g3129 301 PANTHER COLD SHOCK DOMAIN PROTEIN 2 157 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3129 Lja-Chr4 59291484 59292838 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lja4g3129 CSD 1.6e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3129 K09250 - gmx:106796585 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3129 4 59291484 59292838 Lja4g3129 4 59291484 59292838 ECH