Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3116 ATGGCTACCAAGTGCATACACCTTTTTGATAAATTATGGAGTTTTGCCACTTGCAAGAAAACCAGATTGCCAACTGGGAGAAGATCAAATCTCCACAGAGATGTGGAAAAAGAAGAATTCCAGTATGCCAGTGCTCAATGTCTCTCATCATACTACAGTGTCTTTGTGGTTCGCCTTGCAATCATGGTCATGCTAGCTATCTTGATTGGTCTACTAACTTTCTTGACATGGCATTTCACAAAGATTTACACAACAAAGTCTCTTAATAGCTTGGCATATGACCTGCGTTATGAACTTCTGCAACGCCCCATCTTGAGGATGTGGAACATTTTGAATTCCACTGCTGAAATTACAGCCTCTCAGGTCAAGCTATCTGAGTATGTTATCAGAAGCCACAGCAACCTTGCCACTCAAGCAGAGCAAGTTGAGATGTATGGAGCTATGAAGGCTGTTACATGGGCATTGTTTTCTAGTAGAAAAGCTCTCGACTCAATAACTGTCAAGTATAGAAACGGGTTTGTCCAGGCATTCCATAGAAACCTGAAGGACAATCACACTTGTTACATTTATTCTGATCTTGCAAATTACTCCATGGCTTCTTGGAATGATAAAGACATTCATGGTAAAAACTCTTCGATTTGGTATCGCGAACCGCTGGATCCTGTTACAGGTGAGAAGATTGGGAAAGCAATGAAAATTGCCCCAGAAGACTCAATCAACATTGCTGGCCTCTCCCAAGTACCTGATGGTGTAGCTTCGTGGCACGTTGCAGTGAGCAAGTTCACAGATTCACCATTGCTCTCTGCAGCATTGCCAGTTTGGGACTCTTCTAATAAGAGCATTGTCGCGGTCGTGGGTGTCACCACTGCACTTTACAGTGTGGGGCAGCTGATGAAAGAGCTAGTTGATTTGCATGGTGGTCACATGTATTTGACCTCCCAAGAGGGTTATTTGCTTGCAACTTCCACACATGACCCTCTGTTGACAAATTCAACTAAGCTTAAGATGGCTGTTGGAAGTGAAAATGAAGCGATAAGACATGGAGCACAGTGGCTGCAGAAAACCTATGGCAATCATTTCCCTCCAAGTCATGAGGTTCATGTAGAGAATGTAAAACTAGGCCACCAACAATATTACATTGACTCCTTCTTCCTAAACTTGAAGAGGCTTCCTCTGGTGGGTGTAATAATCATTCCAAGAAAGCATATCATGGGGGAGGCGGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCAGTGTGTATTATTGTCATTGGATGTGTTTGTATTTTGATATTGACAGATGGAGTATCAAAGGAAATGAAACTAAGAGCAGAACTGATCAGTCACTTGGAAGCAAGAAGGAAGGCAGAGGCATCTAGCAACTATAAAAGCCAGTTTCTTGCAAATATGAGTCATGAACTGAGGACGCCTATGGCAGCGGTGATCGGGTTACTTGACATTCTCATATCTGATGATCATCTCACAAATGAACAATGTGCAACAGTTACCCAGATAAGGAAATGCTCAACTGCCCTCCTCCGTCTACTTAATAACATCTTGGATCTGAGCAAGGTGGAATCGGGAAAACTAGTCCTAGAGAATGCAGAATTTGACTTGGGACGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTTCAATGTATTAATCACAGTGTAGAGATAATTTTAGATCTGTCTGATGATATGCCAAAGCTAGTCCGAGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATTAAGTTTACTCTATCGGGTCACATTATTCTGCGAGGATGGTGTGAAAACCCCAATTCTTGTAGTGACAATCCAAAATCAGGGTATTTACAGAAGACAAGAACTAAGCAACATGAAAACCATGTAAAGAAGATTTCAAATAGTGATAACAAAATGATACTTTGGTTTGAGGTTGATGACACTGGCTGTGGTATTGACCCGTGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCAGATCCATCAACAACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGATCCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAAGGCCCAGGAACACTTATGCGATTATACCTATGTCTTAGTGCCCCGGTAGATGCCACAGAACAACATTGTCAAGCAGATTTCAGTAACAATGGCTTAGTGGTTCTGCTAGCACTACATGGCGATAGGGGTCGATTAACAACATCTAAATGGTTACAGCAAAACGGGGTGATCACTCTGGAGGCGTCTGAATGGAATGGATTAACACAAATTCTAAGGGAACTCTTTCACGCAAGAAGTCCAGCCTATAATAATGGCTTCGATGCACATTATCCACTACTTGAGCGCTTGAAGTCTAAATTTTTGAGCATACAGGAATTGACAAACCCAGCATATGTCATTGCTGTTGACATTGAACTACTTGACTTAAGCACAGATATATGGAAAGAACAGCTTAACTTCCTTCACAAGTACCGTGGGAGAGCAAAATTTGTTTGGGTACTAAACCATGACAACAACAACACCATAAAAATGGAGCTTCGCAAGAAAGGACACATACTCACAGTCAATAAACCCCTTTACAAAACAAAGATGATTCATGTTTTGGAAGCTGTCATAAAGGAGAAAAATGTTGAGTTGCAAAGGAAAAATAAAGGGGGTGATTTGCATGAGAGTCTTGAGATTGATTATACTCATTGTGATCTTGCAAGCTCGGATGGTTCTGACATATCTGAAATGGGTGGGTCTAATTTTGTTTGTGCCAGTGGAGATAAACAAAGAGAAGAGGTAGTTAGATCCTATTCTTCATCACAATACCAGATAAATAACTGCTTAGTAGGATTAGCACATGAACATATGGAACATAATACTCCAAGGAAAGAAGGGTCATATCAGAGCAACCCCAACTCCAAGGATGTGACTAAACTAGGAACCTTTTCAACAGGTGAAGATTCTGAATGTGGCGAGATGCGTAGGGCCAATAGCTCAAGTAGAGCAGTAAATGGGAAGAAATCTCTTGAAGGTGTGAGGATATTGCTAGCAGAAGATACACCGGTGATTCAAAGAGTTGCAACCATAATGCTTGAAAAAATGGGAGCCACTGTTGTTGCTGTAGGTGATGGACAACAGGCAGTGGATGCTCTGAATGGCATGCTTGGTGTTGAAGATGGTAGAAGGGAGTCTCTCCTAAAGGAAAGAAACATAAGATCATCTCAAACTGAGATCCTAAATTGTCCCCCATATGACTTGGTCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGAAATCAGAAAATCAGAAGTGGGAACTGGATTGCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAATGTTTGGGGGTGGGTATGGATGCTTATTTGACAAAGCCAATTGACTTCAAATTGATGGAGTCCACTATTCTTTCAGTGACGAGAAGGACAACCTGA 3549 0.4145 MATKCIHLFDKLWSFATCKKTRLPTGRRSNLHRDVEKEEFQYASAQCLSSYYSVFVVRLAIMVMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITASQVKLSEYVIRSHSNLATQAEQVEMYGAMKAVTWALFSSRKALDSITVKYRNGFVQAFHRNLKDNHTCYIYSDLANYSMASWNDKDIHGKNSSIWYREPLDPVTGEKIGKAMKIAPEDSINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVDLHGGHMYLTSQEGYLLATSTHDPLLTNSTKLKMAVGSENEAIRHGAQWLQKTYGNHFPPSHEVHVENVKLGHQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGEADERAFKTLVILISASVCIIVIGCVCILILTDGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDHLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLENAEFDLGRELEGLVDMFSVQCINHSVEIILDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNSCSDNPKSGYLQKTRTKQHENHVKKISNSDNKMILWFEVDDTGCGIDPCKWDSVFESFEQADPSTTRLHGGTGLGLCIVRSLVNKMGGEIKVVKKEGPGTLMRLYLCLSAPVDATEQHCQADFSNNGLVVLLALHGDRGRLTTSKWLQQNGVITLEASEWNGLTQILRELFHARSPAYNNGFDAHYPLLERLKSKFLSIQELTNPAYVIAVDIELLDLSTDIWKEQLNFLHKYRGRAKFVWVLNHDNNNTIKMELRKKGHILTVNKPLYKTKMIHVLEAVIKEKNVELQRKNKGGDLHESLEIDYTHCDLASSDGSDISEMGGSNFVCASGDKQREEVVRSYSSSQYQINNCLVGLAHEHMEHNTPRKEGSYQSNPNSKDVTKLGTFSTGEDSECGEMRRANSSSRAVNGKKSLEGVRILLAEDTPVIQRVATIMLEKMGATVVAVGDGQQAVDALNGMLGVEDGRRESLLKERNIRSSQTEILNCPPYDLVLMDCQMPKMDGYEATKEIRKSEVGTGLHIPIVALTAHAMSCDEAKCLGVGMDAYLTKPIDFKLMESTILSVTRRTT* 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3116 1182 SMART REC_2 1031 1174 IPR001789 GO:0000160
Lja4g3116 1182 PRINTS Bacterial sensor protein C-terminal signature 649 663 IPR004358 GO:0016310|GO:0016772
Lja4g3116 1182 PRINTS Bacterial sensor protein C-terminal signature 667 677 IPR004358 GO:0016310|GO:0016772
Lja4g3116 1182 PRINTS Bacterial sensor protein C-terminal signature 684 702 IPR004358 GO:0016310|GO:0016772
Lja4g3116 1182 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 453 533 IPR036097 GO:0000155|GO:0007165
Lja4g3116 1182 Gene3D - 534 725 IPR036890 -
Lja4g3116 1182 MobiDBLite consensus disorder prediction 982 1003 - -
Lja4g3116 1182 CDD REC_hyHK_CKI1_RcsC-like 1033 1174 - -
Lja4g3116 1182 Gene3D - 454 533 - -
Lja4g3116 1182 ProSiteProfiles Response regulatory domain profile. 1032 1178 IPR001789 GO:0000160
Lja4g3116 1182 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1179 - -
Lja4g3116 1182 Pfam Response regulator receiver domain 1101 1171 IPR001789 GO:0000160
Lja4g3116 1182 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 579 721 IPR003594 -
Lja4g3116 1182 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1179 - -
Lja4g3116 1182 CDD HisKA 467 528 IPR003661 GO:0000155|GO:0007165
Lja4g3116 1182 MobiDBLite consensus disorder prediction 978 1021 - -
Lja4g3116 1182 SMART HKATPase_4 579 724 IPR003594 -
Lja4g3116 1182 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 521 720 IPR036890 -
Lja4g3116 1182 SMART HisKA_10 466 532 IPR003661 GO:0000155|GO:0007165
Lja4g3116 1182 Gene3D - 1010 1178 - -
Lja4g3116 1182 Pfam His Kinase A (phospho-acceptor) domain 467 532 IPR003661 GO:0000155|GO:0007165
Lja4g3116 1182 ProSiteProfiles Histidine kinase domain profile. 473 724 IPR005467 -
Lja4g3116 1182 SUPERFAMILY CheY-like 1029 1180 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3116 Lja-Chr4 58919416 58926214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3116 8 1179 Histidine Kinase Gene Family AT2G17820 64.256 0.0 1516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja4g3116 HATPase_c 1.4e-21 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3116 - - gmx:100801970 1932.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3116 4 58919416 58926214 Lja4g3116 4 58919416 58926214 ECH
Lja2g0565 2 5109100 5115776 Lja4g3116 4 58919416 58926214 PCT