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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Lja4g3108
ATGAGGAAGCTAAAGTTCCATGAGCAGAAGCTTCTAAAGAAGGTCAATTTTTTGGAATGGAAGCGAGAAGGAGGTCACAGAGAGAACCTCGTTATGCAGCGCTACCACGTTACTGGACGAGATGATTACAAAAAATATTCAAGTTTATGCGGAATGGTTCAGAAGTTGGTAAACATATTGAAACAGATGGACCCCAAGGATCCTGTTCGGGTCGATATGACTGATAAGCTTTTGGAAAAGCTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACAATGTGAACACTTAACTGTGTCATCCTTCTGTAGGCGTAGGCTCTCGACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTGACATATATTGAGCAGGGGCATGTGCGAGTTGGTCCAGAGACAGTTACAGATCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTTGTGACATGGGTGGATTCATCCAAGATAAAGAGAAAGGTGCTTAAGTACAATGACAAGTTGGATGACTATGATATAATGAATTAA
549
0.4171
MRKLKFHEQKLLKKVNFLEWKREGGHRENLVMQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPKDPVRVDMTDKLLEKLYNMGVIPTRQSITQCEHLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVDSSKIKRKVLKYNDKLDDYDIMN*
183
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Lja4g3108
182
ProSiteProfiles
S4 RNA-binding domain profile.
107
173
-
-
Lja4g3108
182
PANTHER
30S 40S RIBOSOMAL PROTEIN
1
181
IPR022801
-
Lja4g3108
182
PANTHER
U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3
1
181
-
-
Lja4g3108
182
SUPERFAMILY
Alpha-L RNA-binding motif
26
175
-
-
Lja4g3108
182
CDD
S4
107
175
-
-
Lja4g3108
182
SMART
s4_6
107
170
IPR002942
GO:0003723
Lja4g3108
182
Pfam
Ribosomal protein S4/S9 N-terminal domain
3
106
IPR001912
GO:0019843
Lja4g3108
182
SMART
Ribosomal_S4_2
3
106
IPR001912
GO:0019843
Lja4g3108
182
Gene3D
-
107
182
IPR036986
GO:0003723
Lja4g3108
182
Pfam
S4 domain
107
153
IPR002942
GO:0003723
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Lja4g3108
Lja-Chr4
58821033
58824310
Dispersed
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Lja4g3108
63
148
Cytoplasmic Ribosomal Protein Gene Family
AT5G39850
32.184
6.14e-09
51.6
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Lja4g3108
K14560
-
gmx:100798516
355.14
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