Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3093 ATGCTATCTCGGTTAATGGACTTGTACCTGAGCTCCTGCTGGCGGCGGCGAGGATCCACGGACCACCGCAAAGGGGGCTCGGATGTGGGTTCGGGGCGGAAGGAAGGGCTGTTGTGGTACAAGGACACCGGACAGCACTTATTTGGTGAGTACTCTATGGCGGTGGTGCAGGCTAACAACCTGCTTGAGGATCAGAGCCAGCTTGAGTCTGGTCCACTCAGCTTCATCGACGATGGTGGCGGCCCGTACGGTACTTTCATCGGTGTCTATGATGGTCACGGTGGACCTGAGACTTCACGCTACGTTTGTGATCACCTCTTCCAGCATCTAAAAAGATTTGCGTCTGAGCACAAGTCTATGTCGGTGGAGGTTATTCGGAAGGCATACCAAGCCACGGAAGAAGGTTTTCTGTCAGTGGTTACCAAACTGTGGCCTATGAACGCCCAAATTGCTTCTGTTGGATCTTGTTGTTTGGTTGGTGTGATTTGTGGTGGTGTCCTCTATATTGCTAACCTTGGTGATTCCCGTGCTGTACTTGGGCGCGTTGTCAGGGCAACTGGGGAGGTTTTGGCAATCCAACTTTCTTCGGAGCATAATGTGAGTATAGAATCTGTGAGACAAGAAATGCATTCTTTGCATCCGGATGACTCGAAAATTGTGGTTTTGAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGGTTTCTAGATCCATTGGTGATGTATACCTTAAAAAGGCAGAATTTAACAAGGAACCTCTTTATGCTAAGTTTCGTCTTCGTGACACTTTTAAAAGGCCAATTTTGAGCTCTGACCCATCAATTTCTGTTCATGAACTTCAACAGCATGATCAGTTTATCATATTTGCTTCTGATGGTCTTTGGGAACACCTTAGCAATCAGGATGCTGTTGATATAGTTCAAAATCACCCACACAATGGAAGCGCTCGGAGGCTCATCAAAACTGCTTTGCAGGAAGCAGCTAAAAAGAGAGAGATGAGGTACTCTGATTTGAAGAAAATTGACCGCGGTGTCCGGCGGCATTTCCACGATGATATCACTGTTGTAGTTGTATTTCTGGACTCCAATCTTGTCAGTAGAGCTAGCTCAGTAAGAGGTCCTCCTGTGTCAGTGAGAGGAGGTGGGGTTCCCCTACCTTCTAGATCTTTGGCACCTATGGAATTTAGTTCTGGCTGA 1197 0.4762 MLSRLMDLYLSSCWRRRGSTDHRKGGSDVGSGRKEGLLWYKDTGQHLFGEYSMAVVQANNLLEDQSQLESGPLSFIDDGGGPYGTFIGVYDGHGGPETSRYVCDHLFQHLKRFASEHKSMSVEVIRKAYQATEEGFLSVVTKLWPMNAQIASVGSCCLVGVICGGVLYIANLGDSRAVLGRVVRATGEVLAIQLSSEHNVSIESVRQEMHSLHPDDSKIVVLKHNVWRVKGLIQVSRSIGDVYLKKAEFNKEPLYAKFRLRDTFKRPILSSDPSISVHELQQHDQFIIFASDGLWEHLSNQDAVDIVQNHPHNGSARRLIKTALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDSNLVSRASSVRGPPVSVRGGGVPLPSRSLAPMEFSSG* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3093 398 SMART PP2C_4 42 358 IPR001932 -
Lja4g3093 398 ProSiteProfiles PPM-type phosphatase domain profile. 47 360 IPR001932 -
Lja4g3093 398 CDD PP2Cc 84 360 IPR001932 -
Lja4g3093 398 Gene3D - 38 370 IPR036457 -
Lja4g3093 398 Pfam Protein phosphatase 2C 85 330 IPR001932 -
Lja4g3093 398 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Lja4g3093 398 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 6 390 - -
Lja4g3093 398 SUPERFAMILY PP2C-like 59 361 IPR036457 -
Lja4g3093 398 PANTHER ALPHABET, ISOFORM E-RELATED 6 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3093 Lja-Chr4 58537054 58545784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3093 1 388 PP2C-type Phosphatase Gene Family AT3G51370 74.742 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3093 K01102 - gmx:100777920 684.871